PDB entry 3eph

View 3eph on RCSB PDB site
Description: Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism
Deposited on 2008-09-29, released 2008-11-04
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: 0.197
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA isopentenyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: MOD5, YOR274W
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: tRNA isopentenyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: MOD5, YOR274W
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: tRNA
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: tRNA
    Species: synthetic, synthetic
  • Heterogens: ZN, MG, PPV, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ephA (A:)
skkviviagttgvgksqlsiqlaqkfngevinsdsmqvykdipiitnkhplqeregiphh
vmnhvdwseeyyshrfetecmnaiedihrrgkipivvggthyylqtlfnkrvdtksserk
ltrkqldilestdpdviyntlvkcdpdiatkyhpndyrrvqrmleiyyktgkkpsetfne
qkitlkfdtlflwlyskpeplfqrlddrvddmlergalqeikqlyeyysqnkftpeqcen
gvwqvigfkeflpwltgktddntvkledciermktrtrqyakrqvkwikkmlipdikgdi
ylldatdlsqwdtnasqraiaisndfisnrpikqerapkaleellskgettmkklddwth
ytcnvcrnadgknvvaigekywkihlgsrrhksnlkrntrqadfekwki

    Sequence, based on observed residues (ATOM records):
    >3ephA (A:)
skkviviagttgvgksqlsiqlaqkfngevinsdsmqvykdipiitnkhplqeregiphh
vmnhvdwseeyyshrfetecmnaiedihrrgkipivvggthyylqtlfnkrvdtksserk
ltrkqldilestdpdviyntlvkcdpdiatkyhpndyrrvqrmleiyyktgkkpsetfne
qkitlkfdtlflwlyskpeplfqrlddrvddmlergalqeikqlyeyysqnkftpeqcen
gvwqvigfkeflpwltvkledciermktrtrqyakrqvkwikkmlipdikgdiylldatd
lsqwdtnasqraiaisndfisnrpikqerapkaleellskgettmkklddwthytcnvcr
nadgknvvaigekywkihlgsrrhksnlkrntrqadfekwki

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3ephB (B:)
skkviviagttgvgksqlsiqlaqkfngevinsdsmqvykdipiitnkhplqeregiphh
vmnhvdwseeyyshrfetecmnaiedihrrgkipivvggthyylqtlfnkrvdtksserk
ltrkqldilestdpdviyntlvkcdpdiatkyhpndyrrvqrmleiyyktgkkpsetfne
qkitlkfdtlflwlyskpeplfqrlddrvddmlergalqeikqlyeyysqnkftpeqcen
gvwqvigfkeflpwltgktddntvkledciermktrtrqyakrqvkwikkmlipdikgdi
ylldatdlsqwdtnasqraiaisndfisnrpikqerapkaleellskgettmkklddwth
ytcnvcrnadgknvvaigekywkihlgsrrhksnlkrntrqadfekwki

    Sequence, based on observed residues (ATOM records):
    >3ephB (B:)
skkviviagttgvgksqlsiqlaqkfngevinsdsmqvykdipiitnkhplqeregiphh
vmnhvdwseeyyshrfetecmnaiedihrrgkipivvggthyylqtlfnkrvdtksserk
ltrkqldilestdpdviyntlvkcdpdiatkyhpndyrrvqrmleiyyktgkkpsetfne
qkitlkfdtlflwlyskpeplfqrlddrvddmlergalqeikqlyeyysqnkftpeqcen
gvwqvigfkeflpwltvkledciermktrtrqyakrqvkwikkmlipdikgdiylldatd
lsqwdtnasqraiaisndfisnrpikqerapkaleellskgettmkklddwthytcnvcr
nadgknvvaigekywkihlgsrrhksnlkrntrqadfekwki

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.