PDB entry 3eoy

View 3eoy on RCSB PDB site
Description: structure of reovirus sigma1 in complex with its receptor junctional adhesion molecule-a
Deposited on 2008-09-29, released 2008-11-04
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528
      • see remark 999 (117)
  • Chain 'B':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528
      • see remark 999 (117)
  • Chain 'C':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528 (2-End)
      • see remark 999 (117)
  • Chain 'D':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528 (Start-164)
      • see remark 999 (117)
  • Chain 'E':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528
      • see remark 999 (117)
  • Chain 'F':
    Compound: Outer capsid protein sigma-1
    Species: reovirus [TaxId:10886]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03528
      • see remark 999 (117)
  • Chain 'G':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3eoyA (A:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyA (A:)
pnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclp
afdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqyms
knlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3eoyB (B:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyB (B:)
nlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclpa
fdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqymsk
nlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3eoyC (C:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyC (C:)
spnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihicl
pafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqym
sknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3eoyD (D:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyD (D:)
pnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclp
afdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqyms
knlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3eoyE (E:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyE (E:)
nlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclpa
fdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqymsk
nlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3eoyF (F:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records):
    >3eoyF (F:)
nlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclpa
fdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqymsk
nlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3eoyG (G:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyG (G:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3eoyH (H:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyH (H:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3eoyI (I:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyI (I:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3eoyJ (J:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyJ (J:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'K':
    Sequence, based on SEQRES records:
    >3eoyK (K:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyK (K:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3eoyL (L:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >3eoyL (L:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl