PDB entry 3emt
View 3emt on RCSB PDB site
Description: Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP
Class: transferase
Keywords: phosphotransferase, nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase
Deposited on
2008-09-25, released
2009-08-11
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-08-11, with a file datestamp of
2009-08-07.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.174
AEROSPACI score: 0.6
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: MIMI_R418, NDK
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- see remark 999 (96-102)
- engineered (115)
Domains in SCOPe 2.04: d3emta_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: MIMI_R418, NDK
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- expression tag (5)
- see remark 999 (96-102)
- engineered (115)
Domains in SCOPe 2.04: d3emtb_ - Heterogens: MG, DGI, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3emtA (A:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3emtA (A:)
qrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfnd
ncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenlihasdse
dsavdeisiwfpe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3emtB (B:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3emtB (B:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenlihasds
edsavdeisiwfp