PDB entry 3ekg

View 3ekg on RCSB PDB site
Description: crystal structure of l-rhamnonate dehydratase from azotobacter vinelandii complexed with mg and l-tartrate
Deposited on 2008-09-19, released 2008-09-30
The last revision was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Azotobacter vinelandii AvOP [TaxId:322710]
    Gene: AvinDRAFT_6446
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4J3N3 (3-395)
      • expression tag (1-2)
  • Chain 'B':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Azotobacter vinelandii AvOP [TaxId:322710]
    Gene: AvinDRAFT_6446
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4J3N3 (3-395)
      • expression tag (1-2)
  • Heterogens: TLA, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ekgA (A:)
mslsiptikqvrafvlrgggadyhdqgdghwiddhistpmgkypeyrqsrrsfginvlgt
lvveieasdgnvgfavttggepaayivekhlarflegarvtdieriwdqmynstlyygrk
glvintisgvdlalwdllgkvrrepvhqllggavrdelqfyatgarpdlaqkmgfiggkm
plhhgpsegeeglkknleelatmrervgpdfwlmfdcwmsldlnyatrlargareyglkw
ieealppddywgyaelrrnaptgmmvttgeheatrwgfrmllemgccdiiqpdvgwcggv
tellkisaladahnalvvphgssvysyhfvatrqnspfaeflmmapkadqvvpmfhpqll
gepvpengrmrlsrldqpgfgvtlnpecqlhrpytheghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3ekgA (A:)
slsiptikqvrafvlrgggadyhdqgdghwiddhistpmgkypeyrqsrrsfginvlgtl
vveieasdgnvgfavttggepaayivekhlarflegarvtdieriwdqmynstlyygrkg
lvintisgvdlalwdllgkvrrepvhqllggavrdelqfyatgarpdlaqkmgfiggkmp
lhhgpsegeeglkknleelatmrervgpdfwlmfdcwmsldlnyatrlargareyglkwi
eealppddywgyaelrrnaptgmmvttgeheatrwgfrmllemgccdiiqpdvgwcggvt
ellkisaladahnalvvphgssvysyhfvatrqnspfaeflmmapkadqvvpmfhpqllg
epvpengrmrlsrldqpgfgvtlnpecqlhrpyth

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3ekgB (B:)
mslsiptikqvrafvlrgggadyhdqgdghwiddhistpmgkypeyrqsrrsfginvlgt
lvveieasdgnvgfavttggepaayivekhlarflegarvtdieriwdqmynstlyygrk
glvintisgvdlalwdllgkvrrepvhqllggavrdelqfyatgarpdlaqkmgfiggkm
plhhgpsegeeglkknleelatmrervgpdfwlmfdcwmsldlnyatrlargareyglkw
ieealppddywgyaelrrnaptgmmvttgeheatrwgfrmllemgccdiiqpdvgwcggv
tellkisaladahnalvvphgssvysyhfvatrqnspfaeflmmapkadqvvpmfhpqll
gepvpengrmrlsrldqpgfgvtlnpecqlhrpytheghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3ekgB (B:)
slsiptikqvrafvlrgggadyhdqgdghwiddhistpmgkypeyrqsrrsfginvlgtl
vveieasdgnvgfavttggepaayivekhlarflegarvtdieriwdqmynstlyygrkg
lvintisgvdlalwdllgkvrrepvhqllggavrdelqfyatgarpdlaqkmgfiggkmp
lhhgpsegeeglkknleelatmrervgpdfwlmfdcwmsldlnyatrlargareyglkwi
eealppddywgyaelrrnaptgmmvttgeheatrwgfrmllemgccdiiqpdvgwcggvt
ellkisaladahnalvvphgssvysyhfvatrqnspfaeflmmapkadqvvpmfhpqllg
epvpengrmrlsrldqpgfgvtlnpecqlhrpyth