PDB entry 3ejm
View 3ejm on RCSB PDB site
Description: Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP
Class: transferase
Keywords: NDK Mimivirus phosphotransferase nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase
Deposited on
2008-09-18, released
2009-08-25
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-08-25, with a file datestamp of
2009-08-21.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.166
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: NDK, MIMI_R418
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- expression tag (5)
- see remark 999 (95-96)
- see remark 999 (98)
- see remark 999 (100-102)
Domains in SCOPe 2.01: d3ejma_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: NDK, MIMI_R418
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- expression tag (5)
- see remark 999 (95-96)
- see remark 999 (98)
- see remark 999 (100-102)
Domains in SCOPe 2.01: d3ejmb_ - Heterogens: GDP, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ejmA (A:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3ejmA (A:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasds
edsavdeisiwfpe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ejmB (B:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3ejmB (B:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dncdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasds
edsavdeisiwfpe