PDB entry 3ei8

View 3ei8 on RCSB PDB site
Description: Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with LL-DAP: External aldimine form
Class: transferase
Keywords: aminotransferase, lysine biosynthesis, Pyridoxal 5' phosphate, external aldimine, LL-diaminopimelate, Chloroplast, Pyridoxal phosphate, Transferase, Transit peptide
Deposited on 2008-09-15, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.168
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • engineered (269)
      • expression tag (426-428)
    Domains in SCOPe 2.08: d3ei8a1, d3ei8a2
  • Chain 'B':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • engineered (269)
      • expression tag (426-428)
    Domains in SCOPe 2.08: d3ei8b1, d3ei8b2
  • Heterogens: PLP, SO4, GOL, PL5, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ei8A (A:)
makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
amymsddnprsifeipgaeevametasfsnyagftgvrlgwtvipkkllysdgfpvakdf
nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
fkqlykhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ei8A (A:)
eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
eevametasfsnyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ei8B (B:)
makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
amymsddnprsifeipgaeevametasfsnyagftgvrlgwtvipkkllysdgfpvakdf
nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
fkqlykhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ei8B (B:)
eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
eevametasfsnyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhhh