PDB entry 3ei6

View 3ei6 on RCSB PDB site
Description: Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with PLP-DAP: an external aldimine mimic
Class: transferase
Keywords: aminotransferase, lysine biosynthesis, Pyridoxal 5' phosphate, external aldimine, LL-diaminopimelate, Chloroplast, Pyridoxal phosphate, Transferase, Transit peptide
Deposited on 2008-09-15, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • expression tag (426-427)
    Domains in SCOPe 2.08: d3ei6a1, d3ei6a2
  • Chain 'B':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • expression tag (426-428)
    Domains in SCOPe 2.08: d3ei6b1, d3ei6b2
  • Heterogens: SO4, PL4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ei6A (A:)
    makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
    lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
    dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
    mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
    amymsddnprsifeipgaeevametasfskyagftgvrlgwtvipkkllysdgfpvakdf
    nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
    napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
    fkqlykhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ei6A (A:)
    eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
    akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
    fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
    tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
    eevametasfskyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
    alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
    aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ei6B (B:)
    makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
    lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
    dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
    mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
    amymsddnprsifeipgaeevametasfskyagftgvrlgwtvipkkllysdgfpvakdf
    nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
    napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
    fkqlykhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ei6B (B:)
    eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
    akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
    fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
    tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
    eevametasfskyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
    alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
    aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhhh