PDB entry 3ei2

View 3ei2 on RCSB PDB site
Description: Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex
Deposited on 2008-09-15, released 2009-01-20
The last revision was dated 2009-01-20, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.223
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA damage-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: DDB1, XAP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA damage-binding protein 2
    Species: Danio rerio [TaxId:7955]
    Gene: ddb2, si:dkey-45f10.3
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 5'-d(*dap*dap*dap*dtp*dgp*dap*dap*dtp*(3dr)p*dap*dap*dgp*dcp*dap*dgp*dg)-3'
  • Chain 'H':
    Compound: 5'-d(*dcp*dcp*dtp*dgp*dcp*dtp*dtp*dtp*dap*dtp*dtp*dcp*dap*dtp*dtp*dt)-3'
  • Heterogens: PG4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ei2A (A:)
mhhhhhhrrlvprgsggrmsynyvvtaqkptavngcvtghftsaedlnlliakntrleiy
vvtaeglrpvkevgmygkiavmelfrpkgeskdllfiltakynacileykqsgesidiit
rahgnvqdrigrpsetgiigiidpecrmiglrlydglfkvipldrdnkelkafnirleel
hvidvkflygcqapticfvyqdpqgrhvktyevslrekefnkgpwkqenveaeasmviav
pepfggaiiigqesityhngdkylaiappiikqstivchnrvdpngsryllgdmegrlfm
lllekeeqmdgtvtlkdlrvellgetsiaecltyldngvvfvgsrlgdsqlvklnvdsne
qgsyvvametftnlgpivdmcvvdlerqgqgqlvtcsgafkegslriirngigihehasi
dlpgikglwplrsdpnretddtlvlsfvgqtrvlmlngeeveetelmgfvddqqtffcgn
vahqqliqitsasvrlvsqepkalvsewkepqaknisvascnssqvvvavgralyylqih
pqelrqishtemehevaclditplgdsnglsplcaiglwtdisarilklpsfellhkeml
ggeiiprsilmttfesshyllcalgdgalfyfglnietgllsdrkkvtlgtqptvlrtfr
slsttnvfacsdrptviyssnhklvfsnvnlkevnymcplnsdgypdslalannstltig
tideiqklhirtvplyesprkicyqevsqcfgvlssrievqdtsggttalrpsastqals
ssvsssklfssstaphetsfgeevevhnlliidqhtfevlhahqflqneyalslvscklg
kdpntyfivgtamvypeeaepkqgrivvfqysdgklqtvaekevkgavysmvefngklla
sinstvrlyewttekelrtecnhynnimalylktkgdfilvgdlmrsvlllaykpmegnf
eeiardfnpnwmsaveildddnflgaenafnlfvcqkdsaattdeerqhlqevglfhlge
fvnvfchgslvmqnlgetstptqgsvlfgtvngmiglvtslseswynllldmqnrlnkvi
ksvgkiehsfwrsfhterktepatgfidgdliesfldisrpkmqevvanlqyddgsgmkr
eataddlikvveeltrih

    Sequence, based on observed residues (ATOM records):
    >3ei2A (A:)
msynyvvtaqkptavngcvtghftsaedlnlliakntrleiyvvtaeglrpvkevgmygk
iavmelfrpkgeskdllfiltakynacileykqsgesidiitrahgnvqdrigrpsetgi
igiidpecrmiglrlydglfkvipldrdnkelkafnirleelhvidvkflygcqapticf
vyqdpqgrhvktyevslrekefnkgpwkqenveaeasmviavpepfggaiiigqesityh
ngdkylaiappiikqstivchnrvdpngsryllgdmegrlfmlllekeeqvtlkdlrvel
lgetsiaecltyldngvvfvgsrlgdsqlvklnvdsneqgsyvvametftnlgpivdmcv
vdlerqgqgqlvtcsgafkegslriirngigihehasidlpgikglwplrsdpnretddt
lvlsfvgqtrvlmlngeeveetelmgfvddqqtffcgnvahqqliqitsasvrlvsqepk
alvsewkepqaknisvascnssqvvvavgralyylqihpqelrqishtemehevacldit
plgdglsplcaiglwtdisarilklpsfellhkemlggeiiprsilmttfesshyllcal
gdgalfyfglnietgllsdrkkvtlgtqptvlrtfrslsttnvfacsdrptviyssnhkl
vfsnvnlkevnymcplnsdgypdslalannstltigtideiqklhirtvplyesprkicy
qevsqcfgvlssrievqdtsggttalrpsastqalsssvsssklfeevevhnlliidqht
fevlhahqflqneyalslvscklgkdpntyfivgtamvypeeaepkqgrivvfqysdgkl
qtvaekevkgavysmvefngkllasinstvrlyewttekelrtecnhynnimalylktkg
dfilvgdlmrsvlllaykpmegnfeeiardfnpnwmsaveildddnflgaenafnlfvcq
kdsaattdeerqhlqevglfhlgefvnvfchgslvmqptqgsvlfgtvngmiglvtslse
swynllldmqnrlnkviksvgkiehsfwrsfhterktepatgfidgdliesfldisrpkm
qevvanataddlikvveeltrih

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3ei2B (B:)
mhhhhhhvdenlyfqgggrtggqkkvgqtsilhyiyksslgqsihaqlrqclqepfirsl
ksyklhrtaspfdrrvtslewhpthpttvavgskggdiilwdydvqnktsfiqgmgpgda
itgmkfnqfntnqlfvssirgattlrdfsgsviqvfaktdswdywyccvdvsvsrqmlat
gdstgrllllgldgheifkeklhkakvthaefnprcdwlmatssvdatvklwdlrnikdk
nsyiaemphekpvnaayfnptdstkllttdqrneirvyssydwskpdqiiihphrqfqhl
tpikatwhpmydlivagrypddqlllndkrtidiydansgglvhqlrdpnaagiislnkf
sptgdvlasgmgfniliwnredt

    Sequence, based on observed residues (ATOM records):
    >3ei2B (B:)
gqtsilhyiyksslgqsihaqlrqclqepfirslksyklhrtaspfdrrvtslewhpthp
ttvavgskggdiilwdydvqnktsfiqgmgpgdaitgmkfnqfntnqlfvssirgattlr
dfsgsviqvfaktdswdywyccvdvsvsrqmlatgdstgrllllgldgheifkeklhkak
vthaefnprcdwlmatssvdatvklwdlrnikdknsyiaemphekpvnaayfnptdstkl
lttdqrneirvyssydwskpdqiiihphrqfqhltpikatwhpmydlivagrypddqlll
ndkrtidiydansgglvhqlrdpnaagiislnkfsptgdvlasgmgfniliwnre

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.