PDB entry 3efo

View 3efo on RCSB PDB site
Description: Crystal Structure of the mammalian COPII-coat protein Sec23/24 bound to the transport signal sequence of syntaxin 5
Deposited on 2008-09-09, released 2008-10-21
The last revision was dated 2014-04-16, with a file datestamp of 2014-04-11.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.211
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein transport protein Sec23A
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC23A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15436
      • conflict (192)
  • Chain 'B':
    Compound: SEC24 related gene family, member D
    Species: Homo sapiens [TaxId:9606]
    Gene: SEC24D
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8IYI7 (3-769)
      • expression tag (0-2)
  • Chain 'C':
    Compound: peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3EFO (0-6)
  • Heterogens: ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3efoA (A:)
mttylefiqqneerdgvrfswnvwpssrleatrmvvpvaalftplkerpdlppiqyepvl
csrttcravlnplcqvdyraklwacnfcyqrnqfppsyagiselnqpaellpqfssieyv
vlrgpqmpliflyvvdtcmededlqalkesmqmslsllpptalvglitfgrmvqvhelgc
egisksyvfrgtgdlsakqlqemlglskvpltqatrgpqvqqpppsnrflqpvqkidmnl
tdllgelqrdpwpvpqgkrplrssgvalsiavgllectfpntgarimmfiggpatqgpgm
vvgdelktpirswhdidkdnakyvkkgtkhfealanraattghvidiyacaldqtgllem
kccpnltggymvmgdsfntslfkqtfqrvftkdmhgqfkmgfggtleiktsreikisgai
gpcvslnskgpcvseneigtggtcqwkicglsptttlaiyfevvnqhnapipqggrgaiq
fvtqyqhssgqrrirvttiarnwadaqtqiqniaasfdqeaaailmarlaiyraeteegp
dvlrwldrqlirlcqkfgeyhkddpssfrfsetfslypqfmfhlrrssflqvfnnspdes
syyrhhfmrqdltqslimiqpilyaysfsgppepvlldsssiladrillmdtffqiliyh
getiaqwrksgyqdmpeyenfrhllqapvddaqeilhsrfpmpryidtehggsqarflls
kvnpsqthnnmyawgqesgapiltddvslqvfmdhlkklavssaa

    Sequence, based on observed residues (ATOM records):
    >3efoA (A:)
tylefiqqneerdgvrfswnvwpssrleatrmvvpvaalftplkerpdlppiqyepvlcs
rttcravlnplcqvdyraklwacnfcyqrnqfppsyagiselnqpaellpqfssieyvvl
rgpqmpliflyvvdtcmededlqalkesmqmslsllpptalvglitfgrmvqvhelgceg
isksyvfrgtgdlsakqlqemlglskvsnrflqpvqkidmnltdllgelqrdpwpvpqgk
rplrssgvalsiavgllectfpntgarimmfiggpatqgpgmvvgdelktpirswhdidk
dnakyvkkgtkhfealanraattghvidiyacaldqtgllemkccpnltggymvmgdsfn
tslfkqtfqrvftkdmhgqfkmgfggtleiktsreikisgaigpcvslnskgpcvsenei
gtggtcqwkicglsptttlaiyfevvgrgaiqfvtqyqhssgqrrirvttiarnwadaqt
qiqniaasfdqeaaailmarlaiyraeteegpdvlrwldrqlirlcqkfgeyhkddpssf
rfsetfslypqfmfhlrrssflqvfnnspdessyyrhhfmrqdltqslimiqpilyaysf
sgppepvlldsssiladrillmdtffqiliyhgetiaqwrksgyqdmpeyenfrhllqap
vddaqeilhsrfpmpryidtehggsqarfllskvpiltddvslqvfmdhlkklavs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3efoB (B:)
amgspiqviendrasrggqvyatntrgqipplvttdcmiqdqgnasprfircttycfpct
sdmakqaqiplaavikpfatipsnesplylvnhgesgpvrcnrckaymcpfmqfieggrr
yqcgfcncvndvppfyfqhldhigrrldhyekpelslgsyeyvatldycrkskppnppaf
ifmidvsysniknglvkliceelktmlekipkeeqeetsairvgfitynkvlhffnvksn
laqpqmmvvtdvgevfvplldgflvnyqesqsvihnlldqipdmfadsnenetvfapviq
agmealkaadcpgklfifhsslptaeapgklknrddkklvntdkekilfqpqtnvydsla
kdcvahgcsvtlflfpsqyvdvaslglvpqltggtlykynnfqmhldrqqflndlrndie
kkigfdaimrvrtstgfratdffggilmnnttdvemaaidcdkavtvefkhddklsedsg
aliqcavlyttisgqrrlrihnlglncssqladlykscetdalinffaksafkavlhqpl
kvireilvnqtahmlacyrkncaspsaasqlilpdsmkvlpvymncllkncvllsrpeis
tderayqrqlvmtmgvadsqlffypqllpihtldvkstmlpaavrcsesrlseegiflla
nglhmflwlgvssppeliqgifnvpsfahintdmtllpevgnpysqqlrmimgiiqqkrp
ysmkltivkqreqpemvfrqflvedkglyggssyvdflccvhkeicqlln

    Sequence, based on observed residues (ATOM records):
    >3efoB (B:)
amgspiqviendrasrggqvyatntrgqipplvttdcmiqdqgnasprfircttycfpct
sdmakqaqiplaavikpfatipsnesplylvnhgesgpvrcnrckaymcpfmqfieggrr
yqcgfcncvndvppfyfqhldhigrrldhyekpelslgsyeyvatldycrkskppnppaf
ifmidvsysniknglvkliceelktmlekipkeeqeetsairvgfitynkvlhffnvksn
laqpqmmvvtdvgevfvplldgflvnyqesqsvihnlldqipdmfadsnenetvfapviq
agmealkaadcpgklfifhsslptaeapgklknrddkklvntdkekilfqpqtnvydsla
kdcvahgcsvtlflfpsqyvdvaslglvpqltggtlykynnfqmhldrqqflndlrndie
kkigfdaimrvrtstgfratdffggilmnnttdvemaaidcdkavtvefkhddklsedsg
aliqcavlyttisgqrrlrihnlglncssqladlykscetdalinffaksafkavlhqpl
kvireilvnqtahmlacyrkncaspsaasqlilpdsmkvlpvymncllkncvllsrpeis
tderayqrqlvmtmgvadsqlffypqllpihtldvkstmlpaavrcsesrlseegiflla
nglhmflwlgvssppeliqgifnvpsfahintdmtllpevgnpysqqlrmimgiiqqkrp
ysmkltivkqreqpemvfrqflvedkggssyvdflccvhkeicqlln

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >3efoC (C:)
dvaidmm