PDB entry 3edl

View 3edl on RCSB PDB site
Description: kinesin13-microtubule ring complex
Deposited on 2008-09-03, released 2009-01-20
The last revision was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: EM
Resolution: 28 Å
R-factor: N/A
AEROSPACI score: -0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tubulin alpha-1a chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02550
      • conflict (264)
  • Chain 'B':
    Compound: Beta tubulin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Kinesin-like protein KIF2C
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: DmKlp10A
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: tubulin alpha-1a chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02550
      • conflict (264)
  • Chain 'G':
    Compound: Beta tubulin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, MG, GTP, GDP, TA1, ANP, CN2, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3edlA (A:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
    hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
    rirkladqctglqgfsvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
    vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrligqivssita
    slrfdgalnvdltefqtnlvpyprghfplatyapvisaekayheqlsvaeitnacfepan
    qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyepp
    tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
    aredmaalekdyeevgvdsvegegeeegeey
    

    Sequence, based on observed residues (ATOM records):
    >3edlA (A:)
    recisihvgqagvqignacwelyclehgiqpdghvpravfvdleptvidevrtgtyrqlf
    hpeqlitgkedaannyarghytigkeiidlvldrirkladqctglqgfsvfhsfgggtgs
    gftsllmerlsvdygkksklefsiypapqvstavvepynsiltthttlehsdcafmvdne
    aiydicrrnldierptytnlnrligqivssitaslrfdgalnvdltefqtnlvpyprghf
    platyapvisaekayheqlsvaeitnacfepanqmvkcdprhgkymaccllyrgdvvpkd
    vnaaiatiktkrtiqfvdwcptgfkvginyepptvvpggdlakvqravcmlsnttaiaea
    warldhkfdlmyakrafvhwyvgegmeegefsearedmaalekdyeevgvds
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3edlB (B:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvv
    epynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmm
    aacdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprg
    lkmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatadeqgefeeegeedea
    

    Sequence, based on observed residues (ATOM records):
    >3edlB (B:)
    reivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyvp
    railvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvvr
    kesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvve
    pynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttclr
    fpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmma
    acdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprgl
    kmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvse
    yqqyqd
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3edlD (D:)
    icvcvrkrplnkqelakkeidvisvpskclllvhepklkvdltkylenqafcfdfafdet
    asnevvyrftarplvqtifeggkatcfaygqtgsgkthtmggdlsgksqnaskgiyamas
    rdvfllknqpryrnlnlevyvtffeiyngkvfdllnkkaklrvledsrqqvqvvglqeyl
    vtcaddvikminmgsacrtsgqtfansnssrshacfqillrtkgrlhgkfslvdlagner
    gadtssadrqtrmegaeinksllalkeciralgqnkahtpfreskltqvlrdsfigensr
    tcmiamispgissceytlntlryadrvkels
    

    Sequence, based on observed residues (ATOM records):
    >3edlD (D:)
    icvcvrkrplnkqelakkeidvisvpskclllvhepklkvdltkylenqafcfdfafdet
    asnevvyrftarplvqtifeggkatcfaygqtgsgkthtmggdlqnaskgiyamasrdvf
    llknqpryrnlnlevyvtffeiyngkvfdllnkkaklrvledsrqqvqvvglqeylvtca
    ddvikminmgsacrtnssrshacfqillrtkgrlhgkfslvdlagnermegaeinkslla
    lkeciralgqfreskltqvlrdsfigensrtcmiamispgissceytlntlryadrvkel
    s
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3edlF (F:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
    hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
    rirkladqctglqgfsvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
    vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrligqivssita
    slrfdgalnvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepan
    qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyepp
    tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
    aredmaalekdyeevgvdsvegegeeegeey
    

    Sequence, based on observed residues (ATOM records):
    >3edlF (F:)
    recisihvgqagvqignacwelyclehgiqpdgqmdsfntffsetgagkhvpravfvdle
    ptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvldrirkladqctg
    lqgfsvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvstavvepynsiltt
    httlehsdcafmvdneaiydicrrnldierptytnlnrligqivssitaslrfdgalnvd
    ltefqtnlvpyprihfplatyapvisaeqlsvaeitnacfepanqmvkcdprhgkymacc
    llyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyepptvvpggdlakvqravc
    mlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefsearedmaalekdyeevg
    v
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3edlG (G:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvv
    epynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmm
    aacdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprg
    lkmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatadeqgefeeegeedea
    

    Sequence, based on observed residues (ATOM records):
    >3edlG (G:)
    reivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyvp
    railvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvvr
    kesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvve
    pynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttclr
    fpgqlnadlrklavnmvpfprlhffmpgfapltsltvpeltqqmfdaknmmaacdprhgr
    yltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprglkmsatfig
    nstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvseyqqyqda