PDB entry 3ed0

View 3ed0 on RCSB PDB site
Description: Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with emodin
Class: lyase
Keywords: FabZ complex, Emodin, Cytoplasm, Lipid A biosynthesis, Lipid synthesis, Lyase
Deposited on 2008-09-02, released 2009-07-21
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-07-21, with a file datestamp of 2009-07-17.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.23
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0a_
  • Chain 'B':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0b_
  • Chain 'C':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0c_
  • Chain 'D':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0d_
  • Chain 'E':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0e_
  • Chain 'F':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ed0f_
  • Heterogens: BEN, CL, EMO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ed0A (A:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0A (A:)
lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
vlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlk
hkgmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ed0B (B:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0B (B:)
sqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvl
ivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhk
gmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ed0C (C:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0C (C:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaer

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ed0D (D:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0D (D:)
lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
vlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlk
hkgmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3ed0E (E:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0E (E:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3ed0F (F:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3ed0F (F:)
qffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvli
vegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhkg
miwqvggtaqvdgkvvaeaelkamiaer