PDB entry 3ebl

View 3ebl on RCSB PDB site
Description: crystal structure of rice gid1 complexed with ga4
Deposited on 2008-08-28, released 2008-11-25
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Gibberellin receptor GID1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: GID1, Os05g0407500, LOC_Os05g33730, OJ1657_H11.10, P0040B10.6
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GA4, MPD, NO3, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3eblA (A:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblA (A:)
vvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqsv
glevriyraalefltdapaaepfpviiffhggsfvhssasstiydslcrrfvklskgvvv
svnyrrapehrypcayddgwtalkwvmsqpfmrsggdaqarvflsgdssggniahhvavr
aadegvkvcgnillnamfggterteserrldgkyfvtlqdrdwywkaylpedadrdhpac
npfgpngrrlgglpfaksliivsgldltcdrqlayadalredghhvkvvqcenatvgfyl
lpntvhyhevmeeisdflnanly

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3eblB (B:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblB (B:)
tvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqs
vglevriyraafltdapaaepfpviiffhggsfvhssasstiydslcrrfvklskgvvvs
vnyrrapehrypcayddgwtalkwvmsqpfmrsaqarvflsgdssggniahhvavraade
gvkvcgnillnamfggterteserrldgkyfvtlqdrdwywkaylpedadrdhpacnpfg
pngrrlgglpfaksliivsgldltcdrqlayadalredghhvkvvqcenatvgfyllpnt
vhyhevmeeisdflnanl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3eblC (C:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblC (C:)
vplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqsvg
levriyrafpviiffhggsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypc
ayddgwtalkwvmsqpfmrarvflsgdssggniahhvavraadegvkvcgnillnamfgg
terteserrldgkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksli
ivsgldltcdrqlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflna
n

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3eblD (D:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblD (D:)
vvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqsv
glevriyraaaaepfpviiffhggsfvhssasstiydslcrrfvklskgvvvsvnyrrap
ehrypcayddgwtalkwvmsqpfmrsggdaqarvflsgdssggniahhvavraadegvkv
cgnillnamfggterteserrldgkyfvtlqdrdwywkaylpedadrdhpacnpfgpngr
rlgglpfaksliivsgldltcdrqlayadalredghhvkvvqcenatvgfyllpntvhyh
evmeeisdflnanly

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3eblE (E:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblE (E:)
vplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqsvg
levriyralefltdapaaepfpviiffhggsfvhssasstiydslcrrfvklskgvvvsv
nyrrapehrypcayddgwtalkwvmsqpfmrsarvflsgdssggniahhvavraadegvk
vcgnillnamfggterteserrldgkyfvtlqdrdwywkaylpedadrdhpacnpfgpng
rrlgglpfaksliivsgldltcdrqlayadalredghhvkvvqcenatvgfyllpntvhy
hevmeeisdflnanl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3eblF (F:)
agsdevnrnecktvvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarple
gvssfdhiidqsvglevriyraaaegdaeegaaavtrpilefltdapaaepfpviiffhg
gsfvhssasstiydslcrrfvklskgvvvsvnyrrapehrypcayddgwtalkwvmsqpf
mrsggdaqarvflsgdssggniahhvavraadegvkvcgnillnamfggterteserrld
gkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaksliivsgldltcdr
qlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdflnanlyygshhhhh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3eblF (F:)
vvplhtwvlisnfklsynilrradgtferdlgeyldrrvpanarplegvssfdhiidqsv
glevriyraafpviiffhggsfvhssasstiydslcrrfvklskgvvvsvnyrrapehry
pcayddgwtalkwvmsqpfmrarvflsgdssggniahhvavraadegvkvcgnillnamf
ggterteserrldgkyfvtlqdrdwywkaylpedadrdhpacnpfgpngrrlgglpfaks
liivsgldltcdrqlayadalredghhvkvvqcenatvgfyllpntvhyhevmeeisdfl
nanly