PDB entry 3ebc
View 3ebc on RCSB PDB site
Description: Structure of N141A HincII with Cognate DNA
Class: hydrolase/DNA
Keywords: intermediate, mutant, dimerization, R-loop, Endonuclease, Hydrolase, Nuclease, Restriction system, HYDROLASE-DNA COMPLEX
Deposited on
2008-08-27, released
2008-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Type-2 restriction enzyme HincII
Species: Haemophilus influenzae [TaxId:727]
Gene: hincIIR
Database cross-references and differences (RAF-indexed):
- Uniprot P17743 (Start-259)
- conflict (131)
- engineered (142)
- conflict (174)
Domains in SCOPe 2.08: d3ebca_ - Chain 'B':
Compound: Type-2 restriction enzyme HincII
Species: Haemophilus influenzae [TaxId:727]
Gene: hincIIR
Database cross-references and differences (RAF-indexed):
- Uniprot P17743 (Start-259)
- conflict (131)
- engineered (142)
- conflict (174)
Domains in SCOPe 2.08: d3ebcb_ - Chain 'E':
Compound: 5'-d(*dgp*dcp*dcp*dgp*dgp*dtp*dcp*dgp*dap*dcp*dgp*dgp*dgp*dc)-3'
- Chain 'F':
Compound: 5'-d(*dgp*dcp*dcp*dcp*dgp*dtp*dcp*dgp*dap*dcp*dcp*dgp*dgp*dc)-3'
- Heterogens: MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ebcA (A:)
mamsfikpiyqdinsiligqkvkrpksgtlsghaagepfeklvykflkenlsdltfkqye
ylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekqndtadillv
kdqfyelldvktrnisksaqapaiisayklaqtcakmidnkefdlfdinylevdwelnge
dlvcvstsfaelfksepselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqa
eqraismidkfvkpfkkyilrsrelvdpnsvqarlqdvdgtidtrsklaaaqlytrasqp
elapedpedlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ebcA (A:)
sfikpiyqdinsiligqkvgepfeklvykflkenlsdltfkqyeylndlfmknpaiighe
aryklfnsptllfllsrgkaatenwsienlfeekqndtadillvkdqfyelldvktrnia
qapaiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepse
lyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi
l
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ebcB (B:)
mamsfikpiyqdinsiligqkvkrpksgtlsghaagepfeklvykflkenlsdltfkqye
ylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekqndtadillv
kdqfyelldvktrnisksaqapaiisayklaqtcakmidnkefdlfdinylevdwelnge
dlvcvstsfaelfksepselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqa
eqraismidkfvkpfkkyilrsrelvdpnsvqarlqdvdgtidtrsklaaaqlytrasqp
elapedpedlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ebcB (B:)
sfikpiyqdinsiligqkvkagepfeklvykflkenlsdltfkqyeylndlfmknpaiig
hearyklfnsptllfllsrgkaatenwsienlfeekqndtadillvkdqfyelldvktrn
isaqapaiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfkse
pselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfk
kyil
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.