PDB entry 3eb2

View 3eb2 on RCSB PDB site
Description: Crystal structure of Dihydrodipicolinate Synthase from Rhodopseudomonas palustris at 2.0A resolution
Class: lyase
Keywords: LYSINE BIOSYNTHESIS, PYRUVATE, TIM BARREL, NYSGXRC, 11102O, PSI2., Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, Lyase
Deposited on 2008-08-26, released 2008-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative dihydrodipicolinate synthetase
    Species: Rhodopseudomonas palustris [TaxId:1076]
    Gene: dapA1, RPA1571
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3eb2a_
  • Chain 'B':
    Compound: Putative dihydrodipicolinate synthetase
    Species: Rhodopseudomonas palustris [TaxId:1076]
    Gene: dapA1, RPA1571
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6N9H8 (3-291)
      • expression tag (2)
      • expression tag (292)
    Domains in SCOPe 2.08: d3eb2b1, d3eb2b2, d3eb2b3
  • Chain 'C':
    Compound: Putative dihydrodipicolinate synthetase
    Species: Rhodopseudomonas palustris [TaxId:1076]
    Gene: dapA1, RPA1571
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3eb2c_
  • Chain 'D':
    Compound: Putative dihydrodipicolinate synthetase
    Species: Rhodopseudomonas palustris [TaxId:1076]
    Gene: dapA1, RPA1571
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6N9H8 (3-291)
      • expression tag (292)
    Domains in SCOPe 2.08: d3eb2d1, d3eb2d2
  • Heterogens: PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3eb2A (A:)
msldfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqre
avvratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqies
yfraiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrc
gdalqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklw
rvneafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eb2A (A:)
dfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqreavv
ratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqiesyfr
aiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrcgda
lqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklwrvn
eafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaei

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3eb2B (B:)
msldfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqre
avvratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqies
yfraiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrc
gdalqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklw
rvneafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eb2B (B:)
ldfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqreav
vratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqiesyf
raiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrcgd
alqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklwrv
neafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiae

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3eb2C (C:)
msldfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqre
avvratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqies
yfraiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrc
gdalqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklw
rvneafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eb2C (C:)
dfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqreavv
ratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqiesyfr
aiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrcgda
lqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklwrvn
eafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaei

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3eb2D (D:)
msldfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqre
avvratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqies
yfraiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrc
gdalqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklw
rvneafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eb2D (D:)
dfhgvfpylvspvdaegrvradvmgrlcddliqagvhgltplgstgefaylgtaqreavv
ratieaaqrrvpvvagvastsvadavaqaklyeklgadgilaileayfplkdaqiesyfr
aiadaveipvviytnpqfqrsdltldviarlaehpriryikdastntgrllsiinrcgda
lqvfsasahipaavmliggvgwmagpaciaprqsvalyelckaqrwdealmlqrklwrvn
eafakfnlaacikaglalqgydvgdpippqaaltaeerkavekvlaeiae