PDB entry 3e6h
View 3e6h on RCSB PDB site
Description: MHC CLASS I H-2Dd heavy chain complexed with Beta-2 Microglobulin and a variant peptide, PI10, from the human immunodeficiency virus (BaL) envelope glycoprotein 120
Class: immune system
Keywords: COMPLEX (HISTOCOMPATIBILITY-ANTIGEN), Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, Envelope protein, IMMUNE SYSTEM
Deposited on
2008-08-15, released
2009-08-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, D-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-D1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e6ha1, d3e6ha2 - Chain 'B':
Compound: Putative uncharacterized protein
Species: Mus musculus [TaxId:10090]
Gene: B2m, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e6hb_ - Chain 'P':
Compound: Envelope glycoprotein 10-residue peptide
Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3e6hA (A:)
mshslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeyw
eretrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydg
cdyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatll
rtdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpardgt
fqkwasvvvplgkeqkytchveheglpepltlrwg
Sequence, based on observed residues (ATOM records): (download)
>3e6hA (A:)
shslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeywe
retrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydgc
dyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatllr
tdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpardgtf
qkwasvvvplgkeqkytchveheglpepltlrwg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3e6hB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3e6hB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'P':
No sequence available.