PDB entry 3e54

View 3e54 on RCSB PDB site
Description: archaeal intron-encoded homing endonuclease i-vdi141i complexed with dna
Deposited on 2008-08-13, released 2008-12-30
The last revision was dated 2021-11-10, with a file datestamp of 2021-11-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.231
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RRNA intron-encoded endonuclease
    Species: Vulcanisaeta distributa [TaxId:164451]
    Gene: 23S rRNA intron (Vdi141.L1927)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L703
      • engineered mutation (64)
      • engineered mutation (106)
  • Chain 'B':
    Compound: RRNA intron-encoded endonuclease
    Species: Vulcanisaeta distributa [TaxId:164451]
    Gene: 23S rRNA intron (Vdi141.L1927)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L703 (0-168)
      • engineered mutation (64)
      • engineered mutation (106)
  • Chain 'C':
    Compound: DNA (5'-d(*dcp*dtp*dgp*dap*dcp*dtp*dcp*dtp*dcp*dtp*dtp*dap*da)-3')
  • Chain 'D':
    Compound: DNA (5'-d(p*dgp*dgp*dtp*dap*dgp*dcp*dcp*dap*da)-3')
  • Chain 'E':
    Compound: DNA (5'-d(*dtp*dtp*dgp*dgp*dcp*dtp*dap*dcp*dcp*dtp*dtp*dap*da)-3')
  • Chain 'F':
    Compound: DNA (5'-d(p*dgp*dap*dgp*dap*dgp*dtp*dcp*dap*dg)-3')
  • Heterogens: MG, EOH, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3e54A (A:)
mvheedfkegyilgfieaegsfsvsikfqrdvfggvrldpvfsitqknrevleaikehlg
igrimekagqpntyvyvvdnfnelvklinflnkyadfmivkkrqflmfreianglvngeh
lhinglkrlvklayeltkesekgyrkydlnhvlsiidkwdlgrnvstsl

    Sequence, based on observed residues (ATOM records):
    >3e54A (A:)
eedfkegyilgfieaegsfsvsikfqrdvfggvrldpvfsitqknrevleaikehlgigr
imekagqpntyvyvvdnfnelvklinflnkyadfmivkkrqflmfreianglvngehlhi
nglkrlvklayeltkesekgyrkydlnhvlsiidkwdlg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3e54B (B:)
mvheedfkegyilgfieaegsfsvsikfqrdvfggvrldpvfsitqknrevleaikehlg
igrimekagqpntyvyvvdnfnelvklinflnkyadfmivkkrqflmfreianglvngeh
lhinglkrlvklayeltkesekgyrkydlnhvlsiidkwdlgrnvstsl

    Sequence, based on observed residues (ATOM records):
    >3e54B (B:)
eedfkegyilgfieaegsfsvsikfqrdvfggvrldpvfsitqknrevleaikehlgigr
imekagqpntyvyvvdnfnelvklinflnkyadfmivkkrqflmfreianglvngehlhi
nglkrlvklayeltkesekgyrkydlnhvlsiidkwdlg

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.