PDB entry 3e40
View 3e40 on RCSB PDB site
Description: Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+
Class: hydrolase/DNA
Keywords: protein-DNA complex, endonuclease, indirect readout, Hydrolase, Nuclease, Restriction system, HYDROLASE/DNA COMPLEX
Deposited on
2008-08-08, released
2008-08-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-01-20, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.172
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Type-2 restriction enzyme HindII
Species: Haemophilus influenzae [TaxId:727]
Gene: HINDIIR, HI0512
Database cross-references and differences (RAF-indexed):
- Uniprot P44413 (0-256)
- conflict (65)
- engineered (136)
Domains in SCOPe 2.08: d3e40a_ - Chain 'B':
Compound: Type-2 restriction enzyme HindII
Species: Haemophilus influenzae [TaxId:727]
Gene: HINDIIR, HI0512
Database cross-references and differences (RAF-indexed):
- Uniprot P44413 (0-256)
- conflict (65)
- engineered (136)
Domains in SCOPe 2.08: d3e40b_ - Chain 'E':
Compound: 5'-d(*dgp*dcp*dcp*dgp*dgp*dtp*dp*dap*dap*dcp*dcp*dgp*dgp*dc)-3')
- Chain 'F':
Compound: 5'-d(*dgp*dcp*dcp*dgp*dgp*dtp*dp*dap*dap*dcp*dcp*dgp*dgp*dc)-3')
- Heterogens: CA, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3e40A (A:)
sfikpiyqdinsiligqkvkrpksgtlsghaagepfeklvykflkenlsdltfkqyeyln
dlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekqndtadillvkdq
fyelldvktrnisksafapniisayklaqtcakmidnkefdlfdinylevdwelngedlv
cvstsfaelfksepselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqr
aismidkfvkpfkkyil
Sequence, based on observed residues (ATOM records): (download)
>3e40A (A:)
sfikpiyqdinsiligqkvkragepfeklvykflkenlsdltfkqyeylndlfmknpaii
ghearyklfnsptllfllsrgkaatenwsienlfeekqndtadillvkdqfyelldvktr
nisksafapniisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelf
ksepselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvk
pfkkyil
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3e40B (B:)
sfikpiyqdinsiligqkvkrpksgtlsghaagepfeklvykflkenlsdltfkqyeyln
dlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekqndtadillvkdq
fyelldvktrnisksafapniisayklaqtcakmidnkefdlfdinylevdwelngedlv
cvstsfaelfksepselyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqr
aismidkfvkpfkkyil
Sequence, based on observed residues (ATOM records): (download)
>3e40B (B:)
sfikpiyqdinsiligqkvkreklvykflkenlsdltfkqyeylndlfmknpaiighear
yklfnsptllfllsrgkaatenwsienlfeekndtadillvkdqfyelldvktrnisksa
fapniisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepse
lyinwaaamqiqfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi
l
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.