PDB entry 3e1a

View 3e1a on RCSB PDB site
Description: Structure of the 30S subunit and the tRNAs of E. coli ribosome in Pre-accommodation state
Deposited on 2008-08-03, released 2009-08-18
The last revision was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 9 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 16s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'A':
    Compound: A/T, P and E-site tRNAs
    Species: Escherichia coli [TaxId:562]
  • Chain 'B':
    Compound: 30S ribosomal protein S2
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 30S ribosomal protein S11
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 30S ribosomal protein S12
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: A/T, P and E-site tRNAs
    Species: Escherichia coli [TaxId:562]
  • Chain 'F':
    Compound: 30S ribosomal protein S13
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 30S ribosomal protein S14
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 30S ribosomal protein S15
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 30S ribosomal protein S16
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 30S ribosomal protein S17
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 30S ribosomal protein S18
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 30S ribosomal protein S19
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: mRNA model
    Species: Escherichia coli [TaxId:562]
  • Chain 'N':
    Compound: 30S ribosomal protein S20
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 30S ribosomal protein S3
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: A/T, P and E-site tRNAs
    Species: Escherichia coli [TaxId:562]
  • Chain 'Q':
    Compound: 30S ribosomal protein S21
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 30S ribosomal protein S4
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 30S ribosomal protein S5
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 30S ribosomal protein S6
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 30S ribosomal protein S7
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 30S ribosomal protein S8
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 30S ribosomal protein S9
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 30S ribosomal protein S10
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3e1aB (B:)
matvsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnki
asrkgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletq
sqdgtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlg
ipvfaivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsqdlasqaeesfvea
e

    Sequence, based on observed residues (ATOM records):
    >3e1aB (B:)
mlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkiasrkgkil
fvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqsqdgtfdk
ltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgipvfaivd
tnsdpdgvdfvipgnddairavtlylgavaatvregrs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3e1aC (C:)
makapirarkrvrkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstp
faaqvaaercadavkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphng
crppkkrrv

    Sequence, based on observed residues (ATOM records):
    >3e1aC (C:)
rkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstpfaaqvaaercad
avkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphngcrppkkrrv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3e1aD (D:)
matvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltng
fevtsyiggeghnlqehsvilirggrvkdlpgvryhtvrgaldcsgvkdrkqarskygvk
rpka

    Sequence, based on observed residues (ATOM records):
    >3e1aD (D:)
atvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltngf
evtsyiggeghnlqehsvilirggrvkdlpgvryhtvrgaldcsgvkdrkqarskygvkr
pka

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3e1aF (F:)
mariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdev
akfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkpikk

    Sequence, based on observed residues (ATOM records):
    >3e1aF (F:)
ariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdeva
kfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkp

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3e1aG (G:)
makqsmkarevkrvaladkyfakraelkaiisdvnasdedrwnavlklqtlprdsspsrq
rnrcrqtgrphgflrkfglsrikvreaamrgeipglkkasw

    Sequence, based on observed residues (ATOM records):
    >3e1aG (G:)
akqsmkarevkrvaladkyfakraelkaiisdvndrwnavlklqtlprdsspsrqrnrcr
qtgrphgflrkfglsrikvreaamrgeipglkkasw

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3e1aH (H:)
mslsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmv
sqrrklldylkrkdvarytrlierlglrr

    Sequence, based on observed residues (ATOM records):
    >3e1aH (H:)
slsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmvs
qrrklldylkrkdvarytrlierlglrr

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >3e1aI (I:)
mvtirlarhgakkrpfyqvvvadsrnarngrfiervgffnpiasekeegtrldldriahw
vgqgatisdrvaalikevnkaa

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3e1aJ (J:)
mtdkirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvve
irecrplsktkswtlvrvvekavl

    Sequence, based on observed residues (ATOM records):
    >3e1aJ (J:)
kirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvveire
crplsktkswtlvrvvekav

  • Chain 'K':
    Sequence, based on SEQRES records:
    >3e1aK (K:)
maryfrrrkfcrfttegvveidykdiatlknyitesgkivpsritgtrakyqrqlaraik
rarylsllpytdrhq

    Sequence, based on observed residues (ATOM records):
    >3e1aK (K:)
eidykdiatlknyitesgkivpsritgtrakyqrqlaraikrarylsllpytdrh

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3e1aL (L:)
mprslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpv
fvtdemvghklgefaptrtyrghaadkkakkk

    Sequence, based on observed residues (ATOM records):
    >3e1aL (L:)
rslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpvfv
tdemvghklgefaptrtyr

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    Sequence, based on SEQRES records:
    >3e1aN (N:)
maniksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdr
qaakglihknkaarhkanltaqinkla

    Sequence, based on observed residues (ATOM records):
    >3e1aN (N:)
niksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdrqa
akglihknkaarhkanltaqinkla

  • Chain 'O':
    Sequence, based on SEQRES records:
    >3e1aO (O:)
mgqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierp
aksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsi
tsqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlra
didyntseahttygvigvkvwifkgeilggmaaveqpekpaaqpkkqqrkgrk

    Sequence, based on observed residues (ATOM records):
    >3e1aO (O:)
gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpa
ksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsit
sqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlrad
idyntseahttygvigvkvwifkgei

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >3e1aQ (Q:)
mpvikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavkrhakkl
arenarrtrly

    Sequence, based on observed residues (ATOM records):
    >3e1aQ (Q:)
ikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavk

  • Chain 'R':
    Sequence, based on SEQRES records:
    >3e1aR (R:)
marylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqk
vrriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvsh
kaimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmeg
tfkrkpersdlsadinehlivelysk

    Sequence, based on observed residues (ATOM records):
    >3e1aR (R:)
arylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqkv
rriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvshk
aimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmegt
fkrkpersdlsadinehlivelysk

  • Chain 'S':
    Sequence, based on SEQRES records:
    >3e1aS (S:)
mahiekqagelqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaai
qkamekarrnminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagv
hnvlakaygstnpinvvratidglenmnspemvaakrgk

    Sequence, based on observed residues (ATOM records):
    >3e1aS (S:)
elqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaaiqkamekarr
nminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagvhnvlakayg
stnpinvvratidglenmnspemvaakrgk

  • Chain 'T':
    Sequence, based on SEQRES records:
    >3e1aT (T:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteaspmvkakderrerrddfanet
addaeagdseeeeee

    Sequence, based on observed residues (ATOM records):
    >3e1aT (T:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteas

  • Chain 'U':
    Sequence, based on SEQRES records:
    >3e1aU (U:)
mprrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgksele
afevalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrl
anelsdaaenkgtavkkredvhrmaeankafahyrwlslrsfshqagasskqpalgyln

    Sequence, based on observed residues (ATOM records):
    >3e1aU (U:)
rrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgkseleaf
evalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrlan
elsdaaenkgtavkkredvhrmaeankafa

  • Chain 'V':
    Sequence, based on SEQRES records:
    >3e1aV (V:)
msmqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpele
ltlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqag
lggeiicyva

    Sequence, based on observed residues (ATOM records):
    >3e1aV (V:)
smqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpelel
tlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqagl
ggeiicyva

  • Chain 'W':
    Sequence, based on SEQRES records:
    >3e1aW (W:)
maenqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvek
ldlyitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrk
arrrpqfskr

    Sequence, based on observed residues (ATOM records):
    >3e1aW (W:)
nqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekldl
yitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrkarr
rpqfskr

  • Chain 'X':
    Sequence, based on SEQRES records:
    >3e1aX (X:)
mqnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkd
ardqyeirthlrlvdiveptektvdalmrldlaagvdvqislg

    Sequence, based on observed residues (ATOM records):
    >3e1aX (X:)
ririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkdardq
yeirthlrlvdiveptektvdalmrldlaagvdvqisl