PDB entry 3e05

View 3e05 on RCSB PDB site
Description: CRYSTAL STRUCTURE OF Precorrin-6y C5,15-methyltransferase FROM Geobacter metallireducens GS-15
Class: transferase
Keywords: Porphyrin METABOLISM, S-ADENOSYL-METHIONINE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, METHYLTRANSFERASE, DECARBOXYLASE, Transferase, New York SGX Research Center for Structural Genomics
Deposited on 2008-07-30, released 2008-08-12
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.217
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05a_
  • Chain 'B':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05b_
  • Chain 'C':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05c_
  • Chain 'D':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05d_
  • Chain 'E':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05e_
  • Chain 'F':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05f_
  • Chain 'G':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05g_
  • Chain 'H':
    Compound: Precorrin-6Y C5,15-methyltransferase (Decarboxylating)
    Species: Geobacter metallireducens [TaxId:269799]
    Gene: Gmet_0481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3e05h_
  • Heterogens: CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3e05A (A:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05A (A:)
qypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmpn
grifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmleei
idavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkeykmfeshnpv
yiitawks

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3e05B (B:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05B (B:)
aqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmp
ngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmlee
iidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykmfes
hnpvyiitawks

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3e05C (C:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05C (C:)
aqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmp
ngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmlee
iidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkgteykmfesh
npvyiitawk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3e05D (D:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05D (D:)
ypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmpng
rifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmleeii
davdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykmfeshn
pvyiitawksde

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3e05E (E:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05E (E:)
qypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmpn
grifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmleei
idavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykmfesh
npvyiitawks

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3e05F (F:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05F (F:)
qypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmpn
grifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmleei
idavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkgkmfeshnpvy
iitawks

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3e05G (G:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05G (G:)
ypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlmpng
rifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmleeii
davdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykmfeshn
pvyiitawk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3e05H (H:)
mslaqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasn
lmpngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggm
leeiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkglteykm
feshnpvyiitawksdeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3e05H (H:)
laqypvigidddefatakklitkqevravtlsklrlqddlvmwdigagsasvsieasnlm
pngrifalernpqylgfirdnlkkfvarnvtlveafapeglddlpdpdrvfiggsggmle
eiidavdrrlksegvivlnavtldtltkavefledhgymvevacvnvaktkgeykmfesh
npvyiitawks