PDB entry 3dxt
View 3dxt on RCSB PDB site
Description: Crystal structure of the catalytic core domain of JMJD2D
Class: oxidoreductase, nuclear protein
Keywords: JMJD2D, JMJC, histone demethylase, H3K9, JUMONJI domain-containing protein 2D, oxidoreductase, Chromatin regulator, Dioxygenase, Iron, Metal-binding, Nucleus, Transcription, Transcription regulation, NUCLEAR PROTEIN
Deposited on
2008-07-25, released
2009-10-06
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.176
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: JmjC domain-containing histone demethylation protein 3D
Species: Homo sapiens [TaxId:9606]
Gene: jmjd2d
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3dxta_ - Heterogens: ZN, SO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3dxtA (A:)
metmkskancaqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkar
etydniseiliatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfed
lerkywknriynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpyl
yfgmwkttfawhtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcga
flrhkvalisptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprw
idygkmasqcscgearvtfsmdafvrilqperydlwkrgqdravvdhmeprvpa
Sequence, based on observed residues (ATOM records): (download)
>3dxtA (A:)
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgqd