PDB entry 3dxb

View 3dxb on RCSB PDB site
Description: structure of the uhm domain of puf60 fused to thioredoxin
Deposited on 2008-07-24, released 2008-10-28
The last revision was dated 2017-08-02, with a file datestamp of 2017-07-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (9-117)
      • expression tag (8)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'B':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'C':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'D':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (9-117)
      • expression tag (6-8)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'E':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'F':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'G':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Chain 'H':
    Compound: thioredoxin N-terminally fused to Puf60(UHM)
    Species: Homo sapiens [TaxId:9606]
    Gene: PUF60,FIR,ROBPI,SIAHBP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AA27 (Start-117)
    • Uniprot Q9UHX1 (122-161)
      • linker (118-121)
  • Heterogens: CL, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dxbA (A:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbA (A:)
pmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvakl
nidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmv
lrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiaset
hkaiqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dxbB (B:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbB (B:)
dkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnid
qnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrn
mvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethka
iqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dxbC (C:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbC (C:)
dkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnid
qnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrn
mvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethka
iqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dxbD (D:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbD (D:)
hhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltva
klnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestv
mvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsias
ethkaiqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3dxbE (E:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbE (E:)
kiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnidq
npgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrnm
vdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethkai
qalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3dxbF (F:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbF (F:)
dkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnid
qnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrn
mvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethka
iqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3dxbG (G:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbG (G:)
dkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnid
qnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrn
mvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethka
iqalngrwfagrkvvaevydqerfdnsdlsa

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3dxbH (H:)
mkhhhhhhpmsdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyq
gkltvaklnidqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlags
amestvmvlrnmvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifv
efsiasethkaiqalngrwfagrkvvaevydqerfdnsdlsa

    Sequence, based on observed residues (ATOM records):
    >3dxbH (H:)
dkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnid
qnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanlagsamestvmvlrn
mvdpkdidddlegevteecgkfgavnrviiyqekqgeeedaeiivkifvefsiasethka
iqalngrwfagrkvvaevydqerfdnsdlsa