PDB entry 3dwt

View 3dwt on RCSB PDB site
Description: Structure of CabBCII-10 nanobody
Class: immune system
Keywords: nanobody, humanization, antibody, dromedary VH domain, VHH domain, IMMUNE SYSTEM
Deposited on 2008-07-23, released 2008-12-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.245
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwta_
  • Chain 'B':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwtb_
  • Chain 'C':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwtc_
  • Chain 'D':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwtd_
  • Chain 'E':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwte_
  • Chain 'F':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwtf_
  • Chain 'G':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwtg_
  • Chain 'H':
    Compound: cAbBCII-10
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DWT
    Domains in SCOPe 2.07: d3dwth_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dwtA (A:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtA (A:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dwtB (B:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtB (B:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dwtC (C:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtC (C:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dwtD (D:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtD (D:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3dwtE (E:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtE (E:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3dwtF (F:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtF (F:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3dwtG (G:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtG (G:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
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vtvssr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3dwtH (H:)
qvqlvesgggsvqaggslrlsctasggseysystfslgwfrqapgqereavaaiasmggl
tyyadsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgq
gtqvtvssrgrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwtH (H:)
vqlvesgggsvqaggslrlsctasggssystfslgwfrqapgqereavaaiasmggltyy
adsvkgrftisrdnakntvtlqmnnlkpedtaiyycaavrgyfmrlpsshnfrywgqgtq
vtvssr