PDB entry 3dw9

View 3dw9 on RCSB PDB site
Description: sgrai with cognate dna and manganese bound
Deposited on 2008-07-21, released 2008-08-19
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'B':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'E':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic, synthetic
  • Heterogens: MN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dw9A (A:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dw9A (A:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
gvhrairelyvpptaadlarrffaflnermelvng

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dw9B (B:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dw9B (B:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
vhrairelyvpptaadlarrffaflnermelvng

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.