PDB entry 3dvo

View 3dvo on RCSB PDB site
Description: sgrai with cognate dna and calcium bound
Deposited on 2008-07-18, released 2008-08-19
The last revision was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'B':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'C':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'D':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (0-337)
      • cloning artifact (61)
  • Chain 'E':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (5'-d(*dgp*dap*dgp*dtp*dcp*dcp*dap*dcp*dcp*dgp*dgp*dtp*dgp*dgp*dap*dcp*dtp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dvoA (A:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dvoA (A:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
vhrairelyvpptaadlarrffaflnermelvng

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dvoB (B:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dvoB (B:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
gavhrairelyvpptaadlarrffaflnermelvng

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dvoC (C:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dvoC (C:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaa
vhrairelyvpptaadlarrffaflnermelvng

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dvoD (D:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >3dvoD (D:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
gavhrairelyvpptaadlarrffaflnermelvng

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.