PDB entry 3dvl

View 3dvl on RCSB PDB site
Description: Crystal Structure of Full Length Circadian Clock Protein KaiC with Correct Geometry at Phosphorylation Sites
Deposited on 2008-07-18, released 2009-07-28
The last revision was dated 2009-07-28, with a file datestamp of 2009-07-24.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.239
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Circadian clock protein kinase kaiC
    Species: Synechococcus elongatus [TaxId:1140]
    Gene: kaiC
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ATP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dvlA (A:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlA (A:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptritvdekselsrivrgvqekgpes

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dvlB (B:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlB (B:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptritvdekse

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dvlC (C:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlC (C:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptritvde

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dvlD (D:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlD (D:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptrit

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3dvlE (E:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlE (E:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptritvdeksel

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3dvlF (F:)
mtsaemtspnnnsehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqfl
yngiiefdepgvfvtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvgg
fdlsalierinyaiqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvm
tterieeygpiarygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftit
dhginifplgamrltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsr
fvenacankerailfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhl
qiikseindfkpariaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfm
gahsitdshistitdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdik
dsfrnferiisgsptritvdekselsrivrgvqekgpes

    Sequence, based on observed residues (ATOM records):
    >3dvlF (F:)
ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiiefdepgvf
vtfeetpqdiiknarsfgwdlaklvdegklfildaspdpegqevvggfdlsalierinya
iqkyrarrvsidsvtsvfqqydassvvrrelfrlvarlkqigattvmtterieeygpiar
ygveefvsdnvvilrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamr
ltqrssnvrvssgvvrldemcgggffkdsiilatgatgtgktllvsrfvenacankerai
lfayeesraqllrnayswgmdfeemerqnllkivcaypesagledhlqiikseindfkpa
riaidslsalargvsnnafrqfvigvtgyakqeeitglftntsdqfmgahsitdshisti
tdtiillqyveirgemsrainvfkmrgswhdkairefmisdkgpdikdsfrnferiisgs
ptritvdekselsrivrgvqekgpes