PDB entry 3du4

View 3du4 on RCSB PDB site
Description: Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8-diaminopelargonic acid synthase in bacillus subtilis
Class: Transferase
Keywords: aminotransferase, biotin biosynthesis, pyridoxal phosphate, s-adenosyl-l-methionine, 7-keto, 8-amino pelargonic acid, Transferase
Deposited on 2008-07-16, released 2009-06-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.204
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3du4a_
  • Chain 'B':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3du4b_
  • Heterogens: PLP, KAP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3du4A (A:)
mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
plastaeelsemvaimkqaihevtsled

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3du4B (B:)
mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
plastaeelsemvaimkqaihevtsled