PDB entry 3dsw
View 3dsw on RCSB PDB site
Description: Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with mono-prenylated peptide Ser-Cys(GG)-Ser-Cys derivated from Rab7
Class: Transferase
Keywords: protein prenylation, Metal-binding, Prenyltransferase, Transferase, Zinc, Phosphoprotein
Deposited on
2008-07-14, released
2008-09-09
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-09-08, with a file datestamp of
2009-09-04.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.173
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Geranylgeranyl transferase type-2 subunit alpha
Species: Rattus norvegicus [TaxId:10116]
Gene: Rabggta, Ggta
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Geranylgeranyl transferase type-2 subunit beta
Species: Rattus norvegicus [TaxId:10116]
Gene: Rabggtb, Ggtb
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3dswb_ - Heterogens: ZN, CA, GER, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3dswB (B:)
mgtqqkdvtiksdapdtlllekhadyiasygskkddyeycmseylrmsgvywgltvmdlm
gqlhrmnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvv
ayvqslqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdgg
fgcrpgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvc
yswwvlaslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsl
lgeeqikpvspvfcmpeevlqrvnvqpelvs
Sequence, based on observed residues (ATOM records): (download)
>3dswB (B:)
qkdvtiksdapdtlllekhadyiasygskddyeycmseylrmsgvywgltvmdlmgqlhr
mnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvqs
lqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcrp
gseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcyswwv
laslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgeeq
ikpvspvfcmpeevlqrvnvqpelv