PDB entry 3dsa

View 3dsa on RCSB PDB site
Description: Crystal structure of D-ribose high-affinity transport system from Salmonella typhimurium LT2
Class: transport protein
Keywords: D-ribose transport system, rbsD, decamer, CSGID, TRANSPORT PROTEIN, Structural Genomics, Center for Structural Genomics of Infectious Diseases
Deposited on 2008-07-11, released 2008-08-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2008-09-16, with a file datestamp of 2008-09-12.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.187
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsaa1, d3dsaa2
  • Chain 'B':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-141)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsab1, d3dsab2
  • Chain 'C':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-141)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsac1, d3dsac2
  • Chain 'D':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-141)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsad1, d3dsad2
  • Chain 'E':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsae1, d3dsae2
  • Chain 'F':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsaf1, d3dsaf2
  • Chain 'G':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsag1, d3dsag2
  • Chain 'H':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsah1, d3dsah2
  • Chain 'I':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsai1, d3dsai2
  • Chain 'J':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
  • Chain 'K':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
  • Chain 'L':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
  • Chain 'M':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
  • Chain 'N':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
  • Chain 'O':
    Compound: D-ribose high-affinity transport system
    Species: Salmonella typhimurium [TaxId:602]
    Gene: rbsD, STM3881
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZKW0 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3dsao1, d3dsao2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dsaA (A:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaA (A:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dsaB (B:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaB (B:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvtf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dsaC (C:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaC (C:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvtf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dsaD (D:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaD (D:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvtf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3dsaE (E:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaE (E:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3dsaF (F:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaF (F:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3dsaG (G:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaG (G:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3dsaH (H:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaH (H:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3dsaI (I:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaI (I:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3dsaO (O:)
snamkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdv
vtremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsq
avirsgecspyanvilcagvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3dsaO (O:)
namkkgtvlnseissvisrlghtdtlvvcdaglpipnstaridmaltqgvpsfmqvvdvv
tremqveaailateikqqnpqlhetllthleqlqqhqgntikisyttheqfkkltadsqa
virsgecspyanvilcagvt