PDB entry 3dri

View 3dri on RCSB PDB site
Description: Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation
Deposited on 2008-07-11, released 2009-03-31
The last revision was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.164
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Oligopeptide-binding protein oppA
    Species: Lactococcus lactis [TaxId:416870]
    Gene: oppA, llmg_0701
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: peptide AASASA
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3DRI (0-5)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3driA (A:)
    mgsnqssststkklkagnfdvayqnpdkaikggnlkvayqsdspmkaqwlsglsndatfa
    tmsgpgggqdglfftdsgfkfikggaadvaldkesktatitlrkdlkwsdgsevtakdye
    ftyetianpaygsdrwtdslanivglsdyhtgkaktisgitfpdgengkvikvqfkemkp
    gmtqsgngyfletvapyqylkdvapkdlasspktttkplvtgpfkpenvvagesikyvpn
    pyywgekpklnsityevvstaksvaalssskydiingmvssqykqvknlkgykvlgqqam
    yislmyynlghydaknsinvqdrktplqdqnvrqaigyarnvaevdnkfsnglstpansl
    ippifkqftsssvkgyekqdldkanklldedgwklnkstgyrekdgkelslvyaarvgda
    naetiaqnyiqqwkkigvkvslyngklmefnswvdhmttppgandwditdgswslaseps
    qqdlfsaaapynfghfndseitkdlndidsaksenptyrkaafvkyqedmnkkayviptn
    fmlnytpvnkrvvgmtldygamntwseigvssaklatkgsiegrhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3driA (A:)
    lkagnfdvayqnpdkaikggnlkvayqsdspmkaqwlsglsndatfatmsgpgggqdglf
    ftdsgfkfikggaadvaldkesktatitlrkdlkwsdgsevtakdyeftyetianpaygs
    drwtdslanivglsdyhtgkaktisgitfpdgengkvikvqfkemkpgmtqsgngyflet
    vapyqylkdvapkdlasspktttkplvtgpfkpenvvagesikyvpnpyywgekpklnsi
    tyevvstaksvaalssskydiingmvssqykqvknlkgykvlgqqamyislmyynlghyd
    aknsinvqdrktplqdqnvrqaigyarnvaevdnkfsnglstpanslippifkqftsssv
    kgyekqdldkanklldedgwklnkstgyrekdgkelslvyaarvgdanaetiaqnyiqqw
    kkigvkvslyngklmefnswvdhmttppgandwditdgswslasepsqqdlfsaaapynf
    ghfndseitkdlndidsaksenptyrkaafvkyqedmnkkayviptnfmlnytpvnkrvv
    gmtldygamntwseigvss
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3driB (B:)
    aasasa