PDB entry 3drd

View 3drd on RCSB PDB site
Description: Crystal Structure of 7,8 Diaminopelargonic Acid Synthase Apoenzyme in Bacillus subtilis
Class: Transferase
Keywords: aminotransferase, biotin biosynthesis, pyridoxal phosphate, s-adenosyl-l-methionine, transferase
Deposited on 2008-07-11, released 2009-06-23
The last revision prior to the SCOPe 2.02 freeze date was dated 2010-08-25, with a file datestamp of 2010-08-20.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: 0.208
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3drda_
  • Chain 'B':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3drdb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3drdA (A:)
    mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
    rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
    lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
    vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
    cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
    afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
    lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
    plastaeelsemvaimkqaihevtsled
    

    Sequence, based on observed residues (ATOM records): (download)
    >3drdA (A:)
    mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
    rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
    lkmafqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehhe
    eiaalsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehe
    nvqpdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcaval
    enlalfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepyp
    adrrigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3drdB (B:)
    mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
    rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
    lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
    vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
    cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
    afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
    lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
    plastaeelsemvaimkqaihevtsled
    

    Sequence, based on observed residues (ATOM records): (download)
    >3drdB (B:)
    thdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghr
    kkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameial
    kmafqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehhee
    iaalsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehen
    vqpdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavale
    nlalfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypa
    drrigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsle