PDB entry 3dr7

View 3dr7 on RCSB PDB site
Description: GDP-perosamine synthase from Caulobacter crescentus with bound GDP-3-deoxyperosamine
Class: transferase
Keywords: perosamine, pyridoxal phosphate, o-antigen, lipopolysaccharide, aspartate aminotransferase, deoxysugar, TRANSFERASE
Deposited on 2008-07-10, released 2008-10-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-05-17, with a file datestamp of 2017-05-12.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative perosamine synthetase
    Species: CAULOBACTER CRESCENTUS [TaxId:190650]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (23-44)
    Domains in SCOPe 2.07: d3dr7a1, d3dr7a2
  • Chain 'B':
    Compound: Putative perosamine synthetase
    Species: CAULOBACTER CRESCENTUS [TaxId:190650]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (24-44)
    Domains in SCOPe 2.07: d3dr7b1, d3dr7b2
  • Chain 'C':
    Compound: Putative perosamine synthetase
    Species: CAULOBACTER CRESCENTUS [TaxId:190650]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (24-44)
    Domains in SCOPe 2.07: d3dr7c1, d3dr7c2
  • Chain 'D':
    Compound: Putative perosamine synthetase
    Species: CAULOBACTER CRESCENTUS [TaxId:190650]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (24-44)
    Domains in SCOPe 2.07: d3dr7d1, d3dr7d2
  • Heterogens: GPD, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dr7A (A:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnkiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr7A (A:)
lprisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngtta
lhlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitp
rtkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsff
gnkiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaq
lervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqv
ikdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvi
aaldqvlv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dr7B (B:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnkiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr7B (B:)
prisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttal
hlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitpr
tkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffg
nkiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaql
ervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvi
kdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvia
aldqvlv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dr7C (C:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnkiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr7C (C:)
prisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttal
hlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitpr
tkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffg
nkiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaql
ervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvi
kdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvia
aldqvlv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dr7D (D:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnkiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr7D (D:)
prisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttal
hlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitpr
tkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffg
nkiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaql
ervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvi
kdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvia
aldqvlv