PDB entry 3dr4

View 3dr4 on RCSB PDB site
Description: GDP-perosamine synthase K186A mutant from Caulobacter crescentus with bound sugar ligand
Class: transferase
Keywords: Perosamine, deoxysugar, pyridoxal phosphate, aspartate aminotransferase, o-antigen, TRANSFERASE
Deposited on 2008-07-10, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative perosamine synthetase
    Species: Caulobacter crescentus [TaxId:155892]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (0-44)
      • engineered (205)
    Domains in SCOPe 2.08: d3dr4a1, d3dr4a2
  • Chain 'B':
    Compound: Putative perosamine synthetase
    Species: Caulobacter crescentus [TaxId:155892]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (0-44)
      • engineered (205)
    Domains in SCOPe 2.08: d3dr4b1, d3dr4b2
  • Chain 'C':
    Compound: Putative perosamine synthetase
    Species: Caulobacter crescentus [TaxId:155892]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (0-44)
      • engineered (205)
    Domains in SCOPe 2.08: d3dr4c1, d3dr4c2
  • Chain 'D':
    Compound: Putative perosamine synthetase
    Species: Caulobacter crescentus [TaxId:155892]
    Gene: Per
    Database cross-references and differences (RAF-indexed):
    • Uniprot O85354 (45-390)
      • expression tag (0-44)
      • engineered (205)
    Domains in SCOPe 2.08: d3dr4d1, d3dr4d2
  • Heterogens: G4M, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dr4A (A:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnaiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr4A (A:)
svaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttalhla
lvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitprtka
impvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffgnai
ittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaqlerv
dehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvikdl
dalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrviaald
qvlv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dr4B (B:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnaiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr4B (B:)
risvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttalh
lalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitprt
kaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffgn
aiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaqle
rvdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvik
dldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrviaa
ldqvlv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dr4C (C:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnaiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr4C (C:)
lprisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngtta
lhlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitp
rtkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsff
gnaiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaq
lervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqv
ikdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvi
aaldqvlv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dr4D (D:)
mgsshhhhhhssenlyfqghmsdlprisvaaprldgnerdyvlecmdttwissvgrfive
fekafadycgvkhaiacnngttalhlalvamgigpgdevivpsltyiasansvtycgatp
vlvdndprtfnldaaklealitprtkaimpvhlygqicdmdpilevarrhnllviedaae
avgatyrgkksgslgdcatfsffgnaiittgeggmittndddlaakmrllrgqgmdpnrr
ywfpivgfnyrmtniqaaiglaqlervdehlaarervvgwyeqklarlgnrvtkphvalt
grhvfwmytvrlgeglsttrdqvikdldalgiesrpvfhpmhimppyahlatddlkiaea
cgvdglnlpthaglteadidrviaaldqvlv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dr4D (D:)
prisvaaprldgnerdyvlecmdttwissvgrfivefekafadycgvkhaiacnngttal
hlalvamgigpgdevivpsltyiasansvtycgatpvlvdndprtfnldaaklealitpr
tkaimpvhlygqicdmdpilevarrhnllviedaaeavgatyrgkksgslgdcatfsffg
naiittgeggmittndddlaakmrllrgqgmdpnrrywfpivgfnyrmtniqaaiglaql
ervdehlaarervvgwyeqklarlgnrvtkphvaltgrhvfwmytvrlgeglsttrdqvi
kdldalgiesrpvfhpmhimppyahlatddlkiaeacgvdglnlpthaglteadidrvia
aldqvlv