PDB entry 3dqq

View 3dqq on RCSB PDB site
Description: The crystal structure of the putative tRNA synthase from Salmonella typhimurium LT2
Class: structural genomics, unknown function
Keywords: tRNA synthase, Salmonella typhimurium, Structural Genomics, CSGID, unknown function, Center for Structural Genomics of Infectious Diseases
Deposited on 2008-07-09, released 2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.189
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative tRNA synthase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: ygbK, STM2917
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZMG5 (1-420)
      • expression tag (0)
    Domains in SCOPe 2.08: d3dqqa1, d3dqqa2
  • Chain 'B':
    Compound: Putative tRNA synthase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: ygbK, STM2917
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dqqb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dqqA (A:)
gmlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqe
aikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpv
ngrtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegva
atraalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvs
qarsagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaq
wvlsqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfiva
ggetsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefq
v

    Sequence, based on observed residues (ATOM records): (download) 
    >3dqqA (A:)
gmlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqe
aikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpv
ngrtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegva
atraalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvs
rsagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqwv
lsqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivagg
etsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefqv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dqqB (B:)
gmlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqe
aikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpv
ngrtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegva
atraalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvs
qarsagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaq
wvlsqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfiva
ggetsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefq
v

    Sequence, based on observed residues (ATOM records): (download) 
    >3dqqB (B:)
mlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqea
ikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpvn
grtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegvaa
traalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwaksagyp
lsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqwvlsqdse
lapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivaggetsgvv
tqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefq