PDB entry 3dpr

View 3dpr on RCSB PDB site
Description: human rhinovirus 2 bound to a concatamer of the vldl receptor module v3
Deposited on 2008-07-09, released 2009-04-07
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein vp1
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: protein vp2
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: protein vp3
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: protein vp4
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: LDL-receptor class A 3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: DAO, CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dprA (A:)
npvenyidevlnevlvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsq
trdemslesflgrsgcihesklevtlanynkenftvwainlqemaqirrkfelftytrfd
seitlvpcisalsqdighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprf
slpflsvasayymfydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkak
hvkawcprppraleytrahrtnfkiedrsiqtaivtrpiittagpsdmy

    Sequence, based on observed residues (ATOM records):
    >3dprA (A:)
lvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsqtrdemslesflgrs
gcihesklevtlanynkenftvwainlqemaqirrkfelftytrfdseitlvpcisalsq
dighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprfslpflsvasayymf
ydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkakhvkawcprpprale
ytrahrtnfkiedrsiqtaivtrpiitta

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dprB (B:)
sptveacgysdriiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtss
nrfytlrsvtwsssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqg
tlivalipehqiasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtl
lgnitifphqfinlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssainti
pitisispmcaefsgarakrq

    Sequence, based on observed residues (ATOM records):
    >3dprB (B:)
riiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtssnrfytlrsvtw
sssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqgtlivalipehq
iasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtllgnitifphqf
inlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssaintipitisispmca
efsgarakrq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >3dprC (C:)
glpvfitpgsgqflttddfqspcalpwyhptkeisipgevknlveicqvdslvpinntdt
yinsenmysvvlqssinapdkifsirtdvasqplattligeissyfthwtgslrfsfmfc
gtanttvklllaytppgiaepttrkdamlgthviwdvglqstismvvpwisashyrntsp
grstsgyitcwyqtrlvippqtpptarllcfvsgckdfclrmardtnlhlqsgaiaq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dprD (D:)
gaqvsrqnvgthstqnsvsngsslnyfninyfkdaasngaskleftqdpskftdpvkdvl
ekgiptlq

    Sequence, based on observed residues (ATOM records):
    >3dprD (D:)
aqvsrqnyfninyfkdaasngaskl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >3dprE (E:)
criheiscgahstqcipvswrcdgendcdsgedeencgn