PDB entry 3dpp

View 3dpp on RCSB PDB site
Description: crystal structure of the substrate binding domain of e. coli dnak in complex with a long pyrrhocoricin-derived inhibitor peptide (form a)
Deposited on 2008-07-09, released 2009-03-10
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chaperone protein dnaK
    Species: Escherichia coli [TaxId:83333]
    Gene: dnaK, groP, grpF, seg, b0014, JW0013
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Chaperone protein dnaK
    Species: Escherichia coli [TaxId:83333]
    Gene: dnaK, groP, grpF, seg, b0014, JW0013
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Inhibitor peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3DPP
  • Chain 'D':
    Compound: Inhibitor peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3DPP
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dppA (A:)
vllldvtplslgietmggvmttliaknttiptkhsqvfstaednqsavtihvlqgerkra
adnkslgqfnldginpaprgmpqievtfdidadgilhvsakdknsgkeqkitikassgln
edeiqkmvrdaeanaeadrkfeelvqtrnqgdhllhstrkqveeagdklpaddktaiesa
ltaletalkgedkaaieakmqelaqvsqklmeiaqqqha

    Sequence, based on observed residues (ATOM records):
    >3dppA (A:)
vllldvtplslgietmggvmttliaknttiptkhsqvfstaednqsavtihvlqgerkra
adnkslgqfnldginpaprgmpqievtfdidadgilhvsakdknsgkeqkitikassgln
edeiqkmvrdaeanaeadrkfeelvqtrnqgdhllhstrkqveeagdklpaddktaiesa
ltaletalkgedkaaieakmqelaqvsqklme

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dppB (B:)
vllldvtplslgietmggvmttliaknttiptkhsqvfstaednqsavtihvlqgerkra
adnkslgqfnldginpaprgmpqievtfdidadgilhvsakdknsgkeqkitikassgln
edeiqkmvrdaeanaeadrkfeelvqtrnqgdhllhstrkqveeagdklpaddktaiesa
ltaletalkgedkaaieakmqelaqvsqklmeiaqqqha

    Sequence, based on observed residues (ATOM records):
    >3dppB (B:)
vllldvtplslgietmggvmttliaknttiptkhsqvfstaednqsavtihvlqgerkra
adnkslgqfnldginpaprgmpqievtfdidadgilhvsakdknsgkeqkitikassgln
edeiqkmvrdaeanaeadrkfeelvqtrnqgdhllhstrkqveeagdklpaddktaiesa
ltaletalkgedkaaieakmqelaqvsqklmeia

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dppC (C:)
vdklyalprptpprpiynrn

    Sequence, based on observed residues (ATOM records):
    >3dppC (C:)
klyalprptpprp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dppD (D:)
vdklyalprptpprpiynrn

    Sequence, based on observed residues (ATOM records):
    >3dppD (D:)
klyalprpt