PDB entry 3dpj

View 3dpj on RCSB PDB site
Description: The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS
Deposited on 2008-07-08, released 2008-09-02
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.196
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LS67 (3-193)
      • expression tag (0-2)
  • Chain 'B':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LS67 (3-193)
      • expression tag (0-2)
  • Chain 'D':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LS67 (3-193)
      • expression tag (1-2)
  • Chain 'F':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LS67 (3-193)
      • expression tag (1-2)
  • Chain 'H':
    Compound: Transcription regulator, TetR family
    Species: Silicibacter pomeroyi [TaxId:89184]
    Gene: SPO1902
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MES, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3dpjA (A:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dpjB (B:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjB (B:)
vqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevirlrl
artaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaqgqa
nglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevadmhr
wldntlpmtt

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >3dpjC (C:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dpjD (D:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjD (D:)
vqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevirlrl
artaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaqgqa
nglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevadmhr
wldntlpmtt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3dpjE (E:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjE (E:)
namvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevir
lrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaq
gqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevad
mhrwldntlpmtt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3dpjF (F:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjF (F:)
qaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevirlrla
rtaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaqgqan
glftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevadmhrw
ldntlpmt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3dpjG (G:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjG (G:)
namvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevir
lrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaq
gqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevad
mhrwldntlpmtt

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3dpjH (H:)
snamvqaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevi
rlrlartaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaa
qgqanglftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrseva
dmhrwldntlpmtt

    Sequence, based on observed residues (ATOM records):
    >3dpjH (H:)
qaqtrdqivaaadelfyrqgfaqtsfvdisaavgisrgnfyyhfktkdeilaevirlrla
rtaqmladwqgtgdsprariasfidlmimnrakitrygcpvgslctelskldhaaqgqan
glftlfrdwlqrqfaeagctteapalamhllarsqgaatlaqsfhdegflrsevadmhrw
ldntlpmt