PDB entry 3dpb
View 3dpb on RCSB PDB site
Description: Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Ala9Val, Ala11Val, and Leu13Val mutations in the Gd donor strand
Class: chaperone/structural protein
Keywords: DONOR STRAND COMPLEMENTATION, FIMBRIAE, CHAPERONE, PROTEIN-PROTEIN COMPLEX, BETA BARREL, Immunoglobulin domain, Periplasm, Plasmid, Capsule, Secreted, CHAPERONE/STRUCTURAL PROTEIN COMPLEX
Deposited on
2008-07-07, released
2009-07-14
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-07-14, with a file datestamp of
2009-07-10.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.201
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Chaperone protein Caf1M
Species: Yersinia pestis [TaxId:632]
Gene: caf1M, YPMT1.82, y5194, y1098, YP_pMT084
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: F1 capsule antigen
Species: Yersinia pestis [TaxId:632]
Gene: caf1, YPMT1.84, y5196, y1100, YP_pMT082
Database cross-references and differences (RAF-indexed):
- Uniprot P26948 (0-148)
- engineered (8)
- engineered (10)
- engineered (12)
Domains in SCOPe 2.02: d3dpbb_ - Chain 'C':
Compound: F1 capsule antigen
Species: Yersinia pestis [TaxId:632]
Gene: caf1, YPMT1.84, y5196, y1100, YP_pMT082
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3dpbc_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3dpbB (B:)
adltasttvtvtvveparitltykegapitimdngnidtellvgtltlggyktgttstsv
nftdaagdpmyltftsqdgnnhqfttkvigkdsrdfdispkvngenlvgddvvlatgsqd
ffvrsigskggklaagkytdavtvtvsnq
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3dpbC (C:)
adltasttvtvtvveparitltykegapitimdngnidtellvgtltlggyktgttstsv
nftdaagdpmyltftsqdgnnhqfttkvigkdsrdfdispkvngenlvgddvvlatgsqd
ffvrsigskggklaagkytdavtvtvsnq
Sequence, based on observed residues (ATOM records): (download)
>3dpbC (C:)
itltykegapitimdngnidtellvgtltlggyktgttstsvnftdaagdpmyltftsqd
gnnhqfttkvigkdsrdfdispkvngenldvvlatgsqdffvrsigskggklaagkytda
vtvtvsnq