PDB entry 3dp1

View 3dp1 on RCSB PDB site
Description: Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with compound 3n
Class: lyase
Keywords: FabZ complex, LYASE
Deposited on 2008-07-07, released 2009-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-06-30, with a file datestamp of 2009-06-26.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.199
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1a_
  • Chain 'B':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1b_
  • Chain 'C':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1c_
  • Chain 'D':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1d_
  • Chain 'E':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1e_
  • Chain 'F':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dp1f_
  • Heterogens: CL, BEN, 2RB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dp1A (A:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1A (A:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dp1B (B:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1B (B:)
sqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvl
ivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhk
gmiwqvggtaqvdgkvvaeaelkamiaer

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dp1C (C:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1C (C:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaer

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dp1D (D:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1D (D:)
sqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvl
ivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhk
gmiwqvggtaqvdgkvvaeaelkamiaer

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3dp1E (E:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1E (E:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaere

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3dp1F (F:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere

    Sequence, based on observed residues (ATOM records): (download) 
    >3dp1F (F:)
sqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvl
ivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhk
gmiwqvggtaqvdgkvvaeaelkamiaer