PDB entry 3dod

View 3dod on RCSB PDB site
Description: Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis
Class: Transferase
Keywords: AMINOTRANSFERASE, BIOTIN BIOSYNTHESIS, PYRIDOXAL PHOSPHATE, S-adenosyl-L-methionine, Transferase
Deposited on 2008-07-03, released 2009-06-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.198
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA, BSU30230
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3doda_
  • Chain 'B':
    Compound: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bioA, BSU30230
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dodb_
  • Heterogens: PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dodA (A:)
mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
plastaeelsemvaimkqaihevtsled

    Sequence, based on observed residues (ATOM records): (download) 
    >3dodA (A:)
hdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrk
kelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialk
mafqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehheei
aalsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehenv
qpdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavalen
lalfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypad
rrigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dodB (B:)
mthdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhgh
rkkelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameia
lkmafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipy
vyrsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrel
cttydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediyk
afyddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlha
lphvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflp
plastaeelsemvaimkqaihevtsled

    Sequence, based on observed residues (ATOM records): (download) 
    >3dodB (B:)
dliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrkk
elddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialkm
afqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehheeia
alsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehenvq
pdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavalenl
alfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypadr
rigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled