PDB entry 3do7
View 3do7 on RCSB PDB site
Description: X-ray structure of a NF-kB p52/RelB/DNA complex
Class: transcription/DNA
Keywords: PROTEIN-DNA COMPLEX, Nucleus, Activator, Alternative splicing, ANK repeat, Chromosomal rearrangement, Cytoplasm, Disease mutation, DNA-binding, Phosphoprotein, Polymorphism, Proto-oncogene, Transcription, Transcription regulation, Ubl conjugation, TRANSCRIPTION/DNA COMPLEX
Deposited on
2008-07-03, released
2009-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-08-18, with a file datestamp of
2009-08-14.
Experiment type: XRAY
Resolution: 3.05 Å
R-factor: 0.23
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Avian reticuloendotheliosis viral (V-rel) oncogene related B
Species: Mus musculus [TaxId:10090]
Gene: Relb
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do7a1, d3do7a2 - Chain 'B':
Compound: Nuclear factor NF-kappa-B p100 subunit
Species: Homo sapiens [TaxId:9606]
Gene: NFKB2, LYT10
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do7b1, d3do7b2 - Chain 'C':
Compound: 5'-d(*dcp*dgp*dgp*dgp*dap*dap*dtp*dtp*dcp*dcp*dc)-3'
- Chain 'D':
Compound: 5'-d(*dcp*dgp*dgp*dgp*dap*dap*dtp*dtp*dcp*dcp*dc)-3'
- Chain 'E':
Compound: 5'-d(*dcp*dgp*dgp*dgp*dap*dap*dtp*dtp*dcp*dcp*dc)-3'
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3do7A (A:)
sctlgrlvspgpcprpylviteqpkqrgmrfryecegrsagsilgessteasktqpaiel
rdcgglrevevtaclvwkdwphrvhphslvgkdctdgvcrvrlrphvsprhsfnnlgiqc
vrkkeieaaierkiqlgidpynagslknhqevdmnvvricfqasyrdqqghlhrmdpils
epvydkkstntselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfs
qadvhrqiaivfktppyedleisepvtvnvflqrltdgvcseplpftylprdhdsy
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3do7B (B:)
gpylviveqpkqrgfrfrygcegpshgglpgassekgrktyptvkicnyegpakievdlv
thsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqr
qrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrdsdgsfslplkpvisqp
ihdskspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdf
sptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.