PDB entry 3do4
View 3do4 on RCSB PDB site
Description: Crystal structure of transthyretin variant T60A at acidic pH
Class: transport protein
Keywords: TTR, AMYLOID FIBRILS, POINT MUTATION, TRANSPORT PROTEIN, RETINOL-BINDING, THYROID HORMONE, Amyloid, Disease mutation, Gamma-carboxyglutamic acid, Glycoprotein, Hormone, Polymorphism, Polyneuropathy, Secreted, Vitamin A
Deposited on
2008-07-03, released
2009-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-07-14, with a file datestamp of
2009-07-10.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.205
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4a_ - Chain 'B':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4b_ - Chain 'C':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4c_ - Chain 'D':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4d_ - Chain 'E':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4e_ - Chain 'F':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4f_ - Chain 'G':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4g_ - Chain 'H':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3do4h_ - Heterogens: ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3do4A (A:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4A (A:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3do4B (B:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4B (B:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3do4C (C:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4C (C:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3do4D (D:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4D (D:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3do4E (E:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4E (E:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3do4F (F:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4F (F:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3do4G (G:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4G (G:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3do4H (H:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhglta
eeefvegiykveidtksywkalgispfhehaevvftandsgprrytiaallspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3do4H (H:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltaeeefvegiy
kveidtksywkalgispfhehaevvftandsgprrytiaallspysysttavvtnp