PDB entry 3dmr

View 3dmr on RCSB PDB site
Description: structure of dmso reductase from rhodobacter capsulatus at ph 7.0
Class: oxidoreductase
Keywords: oxidoreductase, dmso, molybdopterin, ph 7
Deposited on 1997-04-25, released 1998-03-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.181
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dmso reductase
    Species: Rhodobacter capsulatus [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q52675 (Start-822)
      • differences in map (80)
      • differences in map (84)
      • conflict (148)
      • differences in map (275)
      • differences in map (277)
      • differences in map (321)
      • differences in map (335-336)
      • differences in map (353)
      • conflict (415)
      • differences in map (497)
      • conflict (567)
      • missing from gb (593)
      • conflict (596)
    Domains in SCOPe 2.06: d3dmra1, d3dmra2
  • Heterogens: PGD, 6MO, O, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dmrA (A:)
mtkfsgnelraelyrraflsysvapgalgmfgrsllakgaraealangtvmsgshwgvft
atvengrataftpwekdphpspmlagvldsiysptrikypmvrreflekgvnadrstrgn
gdfvrvswdqaldlvaaevkrveetygpegvfggsygwkspgrlhncttllrrmltlagg
yvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmvfwaadpiktsqigwvi
pehgaypglealkakgtkvividpvrtktveffgaehitpkpqtdvaimlgmahtlvaed
lydkdfianytsgfdkflpyldgetdstpktaewaegisgvpaetikelarlfeskrtml
aagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysgggtpstsgpalagitd
ggaatkgpewlaasgasvipvarvvdmlenpgaefdfngtrskfpdvkmaywvggnpfvh
hqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyerndietigdysntgilam
kkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfyddaakqgkaagvqmpa
fdafwaegivefpvtdgadfvryasfredpllnplgtptglieiyskniekmgyddcpah
ptwmeplerldgpgakyplhiaashpfnrlhsqlngtvlregyavqghepclmhpddaaa
rgiadgdvvrvhndrgqiltgvkvtdavmkgviqiyeggwydpsdvtepgtldkygdvnv
lsadigtsklaqgncgqtvlaevekytgpavtltgfvapkaae

    Sequence, based on observed residues (ATOM records): (download) 
    >3dmrA (A:)
langtvmsgshwgvftatvengrataftpwekdphpspmlagvldsiysptrikypmvrr
eflekgvnadrstrgngdfvrvswdqaldlvaaevkrveetygpegvfggsygwkspgrl
hncttllrrmltlaggyvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmv
fwaadpiktsqigwvipehgaypglealkakgtkvividpvrtktveffgaehitpkpqt
dvaimlgmahtlvaedlydkdfianytsgfdkflpyldgetdstpktaewaegisgvpae
tikelarlfeskrtmlaagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysg
ggtpstsgpalagitdggaatkgpewlaasgasvipvarvvdmlenpgaefdfngtrskf
pdvkmaywvggnpfvhhqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyern
dietigdysntgilamkkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfy
ddaakqgkaagvqmpafdafwaegivefpvtdgadfvryasfredpllnplgtptgliei
yskniekmgyddcpahptwmeplerldgpgakyplhiaashpfnrlhsqlngtvlregya
vqghepclmhpddaaargiadgdvvrvhndrgqiltgvkvtdavmkgviqiyeggwydps
dvtepgtldkygdvnvlsadigtsklaqgncgqtvlaevekytgpavtltgfvapkaae