PDB entry 3dmq

View 3dmq on RCSB PDB site
Description: crystal structure of rapa, a swi2/snf2 protein that recycles rna polymerase during transcription
Deposited on 2008-07-01, released 2008-09-09
Made obsolete by 6bog on 2017-12-13

The last revision was dated 2017-12-13, with a file datestamp of 2017-12-08.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA polymerase-associated protein rapA
    Species: Escherichia coli K12 [TaxId:83333]
    Gene: rapA, hepA, yabA, b0059, JW0058
    Database cross-references and differences (RAF-indexed):
    • Uniprot P60240
      • engineered (349)
  • Chain 'B':
    Compound: RNA polymerase-associated protein rapA
    Species: Escherichia coli K12 [TaxId:83333]
    Gene: rapA, hepA, yabA, b0059, JW0058
    Database cross-references and differences (RAF-indexed):
    • Uniprot P60240
      • engineered (349)
  • Heterogens: SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dmqA (A:)
mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdt
itshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqi
drmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevg
lgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqh
daynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaie
qlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknycpvadavamll
agnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrn
trngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegd
natwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsi
ierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldri
gqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqt
egfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafam
nlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwe
hplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptp
vrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksar
alidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldal
rlivvthq

    Sequence, based on observed residues (ATOM records):
    >3dmqA (A:)
pftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdti
tshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqid
rmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevgl
gktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhd
aynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieq
laehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknycpvadavamlla
gnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrnt
rngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdn
atwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsii
erdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrig
qahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqte
gfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamn
lfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitweh
plirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpv
rmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksara
lidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalr
l

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dmqB (B:)
mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdt
itshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqi
drmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevg
lgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqh
daynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaie
qlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknycpvadavamll
agnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrn
trngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegd
natwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsi
ierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldri
gqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqt
egfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafam
nlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwe
hplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptp
vrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksar
alidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldal
rlivvthq

    Sequence, based on observed residues (ATOM records):
    >3dmqB (B:)
pftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdti
tshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqid
rmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevgl
gktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhd
aynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieq
laehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknycpvadavamlla
gnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrnt
rngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdn
atwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsii
erdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrig
qahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqte
gfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamn
lfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitweh
plirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpv
rmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksara
lidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalr
l