PDB entry 3dmp

View 3dmp on RCSB PDB site
Description: 2.6 A crystal structure of uracil phosphoribosyltransferase from Burkholderia pseudomallei
Class: transferase
Keywords: BURKHOLDERIA, PSEUDOMALLEI, URACIL, PHOSPHORIBOSYLTRANSFERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, Glycosyltransferase, Magnesium, Transferase
Deposited on 2008-07-01, released 2008-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: uracil phosphoribosyltransferase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: upp, BPSL1166
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63VS8 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d3dmpa1, d3dmpa2
  • Chain 'B':
    Compound: uracil phosphoribosyltransferase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: upp, BPSL1166
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63VS8 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d3dmpb1, d3dmpb2
  • Chain 'C':
    Compound: uracil phosphoribosyltransferase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: upp, BPSL1166
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63VS8 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d3dmpc1, d3dmpc2
  • Chain 'D':
    Compound: uracil phosphoribosyltransferase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: upp, BPSL1166
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63VS8 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d3dmpd1, d3dmpd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dmpA (A:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfgtkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3dmpA (A:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dmpB (B:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfgtkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3dmpB (B:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dmpC (C:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfgtkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3dmpC (C:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddrpveyl
vrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqdah
pdvklyvasldshlddhayivpglgdagdrlfg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dmpD (D:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfgtkn

    Sequence, based on observed residues (ATOM records): (download) 
    >3dmpD (D:)
smkqdsrfpnlfildhpliqhklthmrdkdtstrtfrellreitllmgyeitrnlpittk
rvetplveidapviagkklaivpvlragvgmsdgllelipsarvghigvyraddhrpvey
lvrlpdledrifilcdpmvatgysaahaidvlkrrgvpgerlmflalvaapegvqvfqda
hpdvklyvasldshlddhayivpglgdagdrlfg