PDB entry 3dmd

View 3dmd on RCSB PDB site
Description: structures and conformations in solution of the signal recognition particle receptor from the archaeon pyrococcus furiosus
Deposited on 2008-06-30, released 2008-11-11
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Signal recognition particle receptor
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: PF1766
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Signal recognition particle receptor
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: PF1766
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8U051 (6-End)
      • expression tag (4-5)
  • Chain 'C':
    Compound: Signal recognition particle receptor
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: PF1766
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dmdA (A:)
gshmasmfgklreklksfvkrveeevekeeeevekkglldriltveikekdvdkaldele
idlleadvalevvdalrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridli
eeirkaekpyvimfvgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleeha
krigvkvikhsygadpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvt
kpnlvifvgdalagnaiveqarqfneavkidgiiltkldadarggaalsisyvidapilf
vgvgqgyddlrpfekewflerifgeena

    Sequence, based on observed residues (ATOM records):
    >3dmdA (A:)
mfgklreklksfvkrveeevekeeeeveltveikekdvdkaldeleidlleadvalevvd
alrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridlieeirkaekpyvimf
vgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleehakrigvkvikhsyga
dpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvtkpnlvifvgdalag
naiveqarqfneavkidgiiltkldadarggaalsisyvidapilfvgvgqgyddlrpfe
kewflerifg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dmdB (B:)
gshmasmfgklreklksfvkrveeevekeeeevekkglldriltveikekdvdkaldele
idlleadvalevvdalrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridli
eeirkaekpyvimfvgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleeha
krigvkvikhsygadpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvt
kpnlvifvgdalagnaiveqarqfneavkidgiiltkldadarggaalsisyvidapilf
vgvgqgyddlrpfekewflerifgeena

    Sequence, based on observed residues (ATOM records):
    >3dmdB (B:)
asmfgklreklksfvkrveeevekeeeevekkglldriltveikekdvdkaldeleidll
eadvalevvdalrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridlieeir
kaekpyvimfvgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleehakrig
vkvikhsygadpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvtkpnl
vifvgdalagnaiveqarqfneavkidgiiltkldadarggaalsisyvidapilfvgvg
qgyddlrpfekewflerifg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dmdC (C:)
gshmasmfgklreklksfvkrveeevekeeeevekkglldriltveikekdvdkaldele
idlleadvalevvdalrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridli
eeirkaekpyvimfvgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleeha
krigvkvikhsygadpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvt
kpnlvifvgdalagnaiveqarqfneavkidgiiltkldadarggaalsisyvidapilf
vgvgqgyddlrpfekewflerifgeena

    Sequence, based on observed residues (ATOM records):
    >3dmdC (C:)
mfgklreklksfvkrveeevekeeeevekkglldriltveikekdvdkaldeleidllea
dvalevvdalrekikqklvgkkvrigtdkgkiieeavkeavseiletsrridlieeirka
ekpyvimfvgfngsgktttiaklanwlknhgfsvviaasdtfragaieqleehakrigvk
vikhsygadpaavaydaiqhakargidvvlidtagrsetnrnlmdemkkiarvtkpnlvi
fvgdalagnaiveqarqfneavkidgiiltkldadarggaalsisyvidapilfvgvgqg
yddlrpfekewflerifg