PDB entry 3dm1

View 3dm1 on RCSB PDB site
Description: crystal structure of the complex of human chromobox homolog 3 (cbx3) with peptide
Deposited on 2008-06-30, released 2008-08-19
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chromobox protein homolog 3
    Species: Homo sapiens [TaxId:9606]
    Gene: CBX3
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Chromobox protein homolog 3
    Species: Homo sapiens [TaxId:9606]
    Gene: CBX3
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Chromobox protein homolog 3
    Species: Homo sapiens [TaxId:9606]
    Gene: CBX3
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Chromobox protein homolog 3
    Species: Homo sapiens [TaxId:9606]
    Gene: CBX3
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dm1A (A:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqkagkek

    Sequence, based on observed residues (ATOM records):
    >3dm1A (A:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dm1B (B:)
kvhrarktmskp

    Sequence, based on observed residues (ATOM records):
    >3dm1B (B:)
kvhrarkt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dm1C (C:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqkagkek

    Sequence, based on observed residues (ATOM records):
    >3dm1C (C:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dm1D (D:)
kvhrarktmskp

    Sequence, based on observed residues (ATOM records):
    >3dm1D (D:)
vhrarktmsk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3dm1E (E:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqkagkek

    Sequence, based on observed residues (ATOM records):
    >3dm1E (E:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3dm1F (F:)
kvhrarktmskp

    Sequence, based on observed residues (ATOM records):
    >3dm1F (F:)
kvhrarktm

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3dm1G (G:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqkagkek

    Sequence, based on observed residues (ATOM records):
    >3dm1G (G:)
efvvekvldrrvvngkveyflkwkgftdadntwepeenldcpelieaflnsqk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3dm1H (H:)
kvhrarktmskp

    Sequence, based on observed residues (ATOM records):
    >3dm1H (H:)
kvhrark