PDB entry 3dlh

View 3dlh on RCSB PDB site
Description: Crystal structure of the guide-strand-containing Argonaute protein silencing complex
Deposited on 2008-06-27, released 2008-09-02
The last revision was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.226
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:262724]
    Gene: TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:262724]
    Gene: TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (5'-d(dtp*dgp*dap*dgp*dgp*dtp*dap*dgp*dtp*dap*dgp*dgp*dtp*dtp*dgp*dtp*dap*dtp*dap*dgp*dt)-3')
  • Chain 'Y':
    Compound: DNA (5'-d(dtp*dgp*dap*dgp*dgp*dtp*dap*dgp*dtp*dap*dgp*dgp*dtp*dtp*dgp*dtp*dap*dtp*dap*dgp*dt)-3')
  • Heterogens: MG, PGE, PO4, ACY, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dlhA (A:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >3dlhA (A:)
hlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgd
glaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlr
rlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleaw
laqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrva
wvadpkdprkpiphltgllvpvltledlheslalslpweerrrrtreiaswigrrlglgt
peavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrral
lrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkall
lreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresf
rfggaacavggghllwtlperipqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqd
efalalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhrdfrg
tprplklvheagdtplealahqifhltrlypasgfafprlpaplhladrlvkevgrlgir
hlkevdreklffv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dlhB (B:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >3dlhB (B:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlhlalslpweerrrrtreiaswigrrlglgt
peavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrral
lrafggaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllr
eglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresfrf
ggaacavggghllwtlpripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqdefa
lalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhgtprplkl
vheagdtplealahqifhltrlypasgfafprlpaplhladrlvkevgrlgirhlkevdr
eklffv

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.