PDB entry 3dlb

View 3dlb on RCSB PDB site
Description: Crystal structure of the guide-strand-containing Argonaute protein silencing complex
Deposited on 2008-06-26, released 2008-09-02
The last revision was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.254
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (5'-d(*dtp*dgp*dap*dgp*dgp*dtp*dap*dgp*dtp*da)-3')
  • Chain 'Y':
    Compound: DNA (5'-d(*dtp*dgp*dap*dgp*dgp*dtp*dap*dgp*dtp*da)-3')
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dlbA (A:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >3dlbA (A:)
hlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgd
glaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlr
rlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleaw
laqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrva
wvadpkdprkpiphltgllvpvltledlheslalslpweerrrrtreiaswigrrlglgt
peavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrral
lrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkall
lreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresf
rfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsrvlllr
dgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledktflllt
vhrdfrgtprplklvheagdtplealahqifhltrly

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dlbB (B:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >3dlbB (B:)
ktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgdgla
swsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrle
gvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawlaq
ghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrvawva
dpkdprkpiphltgllvpvgslalslpweerrrrtreiaswigrrlglgtpeavraqayr
lsipklmgrravskpadalrvgfyraqetalallrldgagwpeflrrallrafgasgasl
rlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllreglpsqiln
vplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresfrfggaacavgg
dgghllwtlpripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqdefalaleala
regiaydlvsvrksgggrvypvqgrladglyvpledktfllltvtprplklvheagdtpl
ealahqifhltrly

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.