PDB entry 3di1

View 3di1 on RCSB PDB site
Description: Crystal structure of the Staphylococcus aureus Dihydrodipicolinate synthase-pyruvate complex
Class: lyase
Keywords: Dihydrodipicolinate synthase, Lysine Biosynthesis, Feedback inhibition, Ping-pong mechanism, Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lyase, Schiff base
Deposited on 2008-06-19, released 2008-08-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.191
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Gene: DHDPS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3di1a_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Gene: DHDPS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3di1b_
  • Heterogens: PYR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3di1A (A:)
mthlfegvgvalttpftnnkvniealkthvnfllennaqaiivngttaesptlttdeker
ilktvidlvdkrvpviagtgtndteksiqasiqakalgadaimlitpyynktnqrglvkh
feaiadavklpvvlynvpsrtnmtiepetveilsqhpyivalkdatndfeyleevkkrid
tnsfalysgnddnvveyyqrggqgvisvianvipkefqalydaqqsgldiqdqfkpigtl
lsalsvdinpipikaltsylgfgnyelrlplvsledtdtkvlretydtfkagene

    Sequence, based on observed residues (ATOM records): (download) 
    >3di1A (A:)
thlfegvgvalttpftnnkvniealkthvnfllennaqaiivngttaesptlttdekeri
lktvidlvdkrvpviagtgtndteksiqasiqakalgadaimlitpyynktnqrglvkhf
eaiadavklpvvlynvpsrtnmtiepetveilsqhpyivalkdatndfeyleevkkridt
nsfalysgnddnvveyyqrggqgvisvianvipkefqalydaqqsgldiqdqfkpigtll
salsvdinpipikaltsylgfgnyelrlplvsledtdtkvlretydtfka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3di1B (B:)
mthlfegvgvalttpftnnkvniealkthvnfllennaqaiivngttaesptlttdeker
ilktvidlvdkrvpviagtgtndteksiqasiqakalgadaimlitpyynktnqrglvkh
feaiadavklpvvlynvpsrtnmtiepetveilsqhpyivalkdatndfeyleevkkrid
tnsfalysgnddnvveyyqrggqgvisvianvipkefqalydaqqsgldiqdqfkpigtl
lsalsvdinpipikaltsylgfgnyelrlplvsledtdtkvlretydtfkagene

    Sequence, based on observed residues (ATOM records): (download) 
    >3di1B (B:)
mthlfegvgvalttpftnnkvniealkthvnfllennaqaiivngttaesptlttdeker
ilktvidlvdkrvpviagtgtndteksiqasiqakalgadaimlitpyynktnqrglvkh
feaiadavklpvvlynvpsrtnmtiepetveilsqhpyivalkdatndfeyleevkkrid
tnsfalysgnddnvveyyqrggqgvisvianvipkefqalydaqqsgldiqdqfkpigtl
lsalsvdinpipikaltsylgfgnyelrlplvsledtdtkvlretydtfka