PDB entry 3dhu

View 3dhu on RCSB PDB site
Description: crystal structure of an alpha-amylase from lactobacillus plantarum
Deposited on 2008-06-18, released 2008-08-12
The last revision was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-amylase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: amy2, lp_0179
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-amylase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: amy2, lp_0179
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-amylase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: amy2, lp_0179
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: alpha-amylase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: amy2, lp_0179
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dhuA (A:)
    mslrdtqtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnr
    kgtlgspyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehp
    ewfyhdadgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpld
    fwlearkqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdf
    kdywqgrstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwif
    mqrgipliyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqla
    vveegivkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdg
    qpvlikyvtntavtkvadqsneghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3dhuA (A:)
    qtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnrkgtlgs
    pyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehpewfyhd
    adgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpldfwlear
    kqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdfkdywqg
    rstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwifmqrgip
    liyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqlavveegi
    vkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdgqpvlik
    yv
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dhuB (B:)
    mslrdtqtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnr
    kgtlgspyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehp
    ewfyhdadgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpld
    fwlearkqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdf
    kdywqgrstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwif
    mqrgipliyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqla
    vveegivkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdg
    qpvlikyvtntavtkvadqsneghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3dhuB (B:)
    qtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnrkgtlgs
    pyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehpewfyhd
    ltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpldfwlearkqvn
    akypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdfkdywqgrstv
    eryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwifmqrgipliyn
    gqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqlavveegivkit
    yraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdgqpvlikyv
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3dhuC (C:)
    mslrdtqtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnr
    kgtlgspyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehp
    ewfyhdadgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpld
    fwlearkqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdf
    kdywqgrstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwif
    mqrgipliyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqla
    vveegivkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdg
    qpvlikyvtntavtkvadqsneghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3dhuC (C:)
    qtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnrkgtlgs
    pyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehpewfyhd
    adgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpldfwlear
    kqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdfkdywqg
    rstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwifmqrgip
    liyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqlavveegi
    vkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdgqpvlik
    yv
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3dhuD (D:)
    mslrdtqtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnr
    kgtlgspyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehp
    ewfyhdadgqltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpld
    fwlearkqvnakypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdf
    kdywqgrstveryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwif
    mqrgipliyngqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqla
    vveegivkityraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdg
    qpvlikyvtntavtkvadqsneghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3dhuD (D:)
    qtqlrnemiysvfvrnyseagnfagvtadlqrikdlgtdilwllpinpigevnrkgtlgs
    pyaikdyrginpeygtladfkaltdrahelgmkvmldivynhtspdsvlatehpewfyhd
    ltnkvgdwsdvkdldyghhelwqyqidtllywsqfvdgyrcdvaplvpldfwlearkqvn
    akypetlwlaesagsgfieelrsqgytglsdselyqafdmtydydvfgdfkdywqgrstv
    eryvdllqrqdatfpgnyvkmrflenhdnarmmslmhskaeavnnltwifmqrgipliyn
    gqeflaehqpslfdrdtmvadrhgdvtpliqklvtikqlpllraadyqlavveegivkit
    yraagealtawiplkgqvtavatklaagsyqnlltdgptevvdgkltvdgqpvlikyv